Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC15.14■□□□□ 0.01
SHROOM3Q8TF72 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
SHROOM3Q8TF72 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SHROOM3Q8TF72 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
SHROOM3Q8TF72 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC15.14■□□□□ 0.01
SHROOM3Q8TF72 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SHROOM3Q8TF72 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC15.14■□□□□ 0.01
SHROOM3Q8TF72 TTC7A-203ENST00000409245 3033 ntTSL 2 BASIC15.14■□□□□ 0.01
SHROOM3Q8TF72 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
SHROOM3Q8TF72 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC15.14■□□□□ 0.01
SHROOM3Q8TF72 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SHROOM3Q8TF72 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
SHROOM3Q8TF72 GGT1-201ENST00000248923 2326 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SHROOM3Q8TF72 MPI-203ENST00000535694 1523 ntTSL 2 BASIC15.13■□□□□ 0.01
SHROOM3Q8TF72 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SHROOM3Q8TF72 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
SHROOM3Q8TF72 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SHROOM3Q8TF72 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
SHROOM3Q8TF72 AL008718.2-201ENST00000609206 1313 ntBASIC15.13■□□□□ 0.01
SHROOM3Q8TF72 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SHROOM3Q8TF72 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SHROOM3Q8TF72 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC15.13■□□□□ 0.01
SHROOM3Q8TF72 AC079178.1-201ENST00000420915 656 ntBASIC15.13■□□□□ 0.01
SHROOM3Q8TF72 FAM197Y7-201ENST00000432892 766 ntBASIC15.13■□□□□ 0.01
SHROOM3Q8TF72 HOMER2P2-201ENST00000451621 847 ntBASIC15.13■□□□□ 0.01
SHROOM3Q8TF72 AC026434.2-201ENST00000506094 1078 ntBASIC15.13■□□□□ 0.01
SHROOM3Q8TF72 AC026495.1-203ENST00000557528 906 ntTSL 5 BASIC15.13■□□□□ 0.01
SHROOM3Q8TF72 AC005730.2-201ENST00000564549 1184 ntBASIC15.13■□□□□ 0.01
SHROOM3Q8TF72 AC025810.1-201ENST00000569986 981 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
SHROOM3Q8TF72 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC15.13■□□□□ 0.01
SHROOM3Q8TF72 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC15.13■□□□□ 0.01
SHROOM3Q8TF72 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SHROOM3Q8TF72 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
SHROOM3Q8TF72 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SHROOM3Q8TF72 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
SHROOM3Q8TF72 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
SHROOM3Q8TF72 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
SHROOM3Q8TF72 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
SHROOM3Q8TF72 GSN-209ENST00000449733 2702 ntTSL 2 BASIC15.13■□□□□ 0.01
SHROOM3Q8TF72 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
SHROOM3Q8TF72 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC15.13■□□□□ 0.01
SHROOM3Q8TF72 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
SHROOM3Q8TF72 LINC01184-204ENST00000501702 2977 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
SHROOM3Q8TF72 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC15.13■□□□□ 0.01
SHROOM3Q8TF72 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
SHROOM3Q8TF72 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC15.13■□□□□ 0.01
SHROOM3Q8TF72 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC15.13■□□□□ 0.01
SHROOM3Q8TF72 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
SHROOM3Q8TF72 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SHROOM3Q8TF72 AC012617.1-204ENST00000586340 2305 ntBASIC15.13■□□□□ 0.01
SHROOM3Q8TF72 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
SHROOM3Q8TF72 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SHROOM3Q8TF72 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
SHROOM3Q8TF72 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
SHROOM3Q8TF72 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC15.13■□□□□ 0.01
SHROOM3Q8TF72 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC15.13■□□□□ 0.01
SHROOM3Q8TF72 ZNF84-215ENST00000543758 3501 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
SHROOM3Q8TF72 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
SHROOM3Q8TF72 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
SHROOM3Q8TF72 CD8B2-202ENST00000417670 633 ntBASIC15.13■□□□□ 0.01
SHROOM3Q8TF72 KRT43P-201ENST00000434019 910 ntBASIC15.13■□□□□ 0.01
SHROOM3Q8TF72 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC15.13■□□□□ 0.01
SHROOM3Q8TF72 PFN2-215ENST00000497148 743 ntTSL 4 BASIC15.13■□□□□ 0.01
SHROOM3Q8TF72 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
SHROOM3Q8TF72 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC15.13■□□□□ 0.01
SHROOM3Q8TF72 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC15.13■□□□□ 0.01
SHROOM3Q8TF72 AP006547.1-201ENST00000563435 692 ntBASIC15.13■□□□□ 0.01
SHROOM3Q8TF72 BTNL10-201ENST00000595971 695 ntBASIC15.13■□□□□ 0.01
SHROOM3Q8TF72 HCG18-245ENST00000602550 559 ntTSL 4 BASIC15.13■□□□□ 0.01
SHROOM3Q8TF72 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC15.13■□□□□ 0.01
SHROOM3Q8TF72 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
SHROOM3Q8TF72 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
SHROOM3Q8TF72 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
SHROOM3Q8TF72 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
SHROOM3Q8TF72 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SHROOM3Q8TF72 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SHROOM3Q8TF72 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
SHROOM3Q8TF72 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SHROOM3Q8TF72 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SHROOM3Q8TF72 HTR7-202ENST00000336152 3126 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
SHROOM3Q8TF72 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SHROOM3Q8TF72 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
SHROOM3Q8TF72 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
SHROOM3Q8TF72 GATB-201ENST00000263985 2385 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SHROOM3Q8TF72 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC15.12■□□□□ 0.01
SHROOM3Q8TF72 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC15.12■□□□□ 0.01
SHROOM3Q8TF72 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SHROOM3Q8TF72 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
SHROOM3Q8TF72 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC15.12■□□□□ 0.01
SHROOM3Q8TF72 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
SHROOM3Q8TF72 MIR326-201ENST00000362220 95 ntBASIC15.12■□□□□ 0.01
SHROOM3Q8TF72 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SHROOM3Q8TF72 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SHROOM3Q8TF72 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
SHROOM3Q8TF72 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
SHROOM3Q8TF72 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC15.12■□□□□ 0.01
SHROOM3Q8TF72 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
SHROOM3Q8TF72 RIT1-205ENST00000539040 919 ntTSL 2 BASIC15.12■□□□□ 0.01
SHROOM3Q8TF72 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC15.12■□□□□ 0.01
SHROOM3Q8TF72 IGFLR1-211ENST00000592889 782 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 52.3 ms