Protein–RNA interactions for Protein: Q7Z3V4

UBE3B, Ubiquitin-protein ligase E3B, humanhuman

Predictions only

Length 1,068 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3BQ7Z3V4 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
UBE3BQ7Z3V4 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
UBE3BQ7Z3V4 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
UBE3BQ7Z3V4 SSR4-203ENST00000370086 643 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
UBE3BQ7Z3V4 TMEM254-204ENST00000372277 366 ntTSL 5 BASIC18.45■□□□□ 0.54
UBE3BQ7Z3V4 CSNK2B-201ENST00000375865 908 ntAPPRIS P1 TSL 3 BASIC18.45■□□□□ 0.54
UBE3BQ7Z3V4 KNCN-202ENST00000396314 608 ntAPPRIS P3 TSL 4 BASIC18.45■□□□□ 0.54
UBE3BQ7Z3V4 DNAJC27-AS1-207ENST00000451291 488 ntTSL 3 BASIC18.45■□□□□ 0.54
UBE3BQ7Z3V4 PABPC5-AS1-201ENST00000456187 426 ntTSL 5 BASIC18.45■□□□□ 0.54
UBE3BQ7Z3V4 AL358393.1-201ENST00000456771 532 ntTSL 2 BASIC18.45■□□□□ 0.54
UBE3BQ7Z3V4 HHIP-AS1-201ENST00000503066 897 ntTSL 5 BASIC18.45■□□□□ 0.54
UBE3BQ7Z3V4 PRSS30P-205ENST00000506153 699 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
UBE3BQ7Z3V4 AC023824.4-202ENST00000569557 849 ntTSL 3 BASIC18.45■□□□□ 0.54
UBE3BQ7Z3V4 C20orf141-202ENST00000603872 580 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
UBE3BQ7Z3V4 AC100757.4-201ENST00000626934 759 ntBASIC18.45■□□□□ 0.54
UBE3BQ7Z3V4 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC18.45■□□□□ 0.54
UBE3BQ7Z3V4 MARS-233ENST00000628866 2583 ntTSL 5 BASIC18.45■□□□□ 0.54
UBE3BQ7Z3V4 CYP4F23P-201ENST00000593402 1579 ntBASIC18.45■□□□□ 0.54
UBE3BQ7Z3V4 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
UBE3BQ7Z3V4 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
UBE3BQ7Z3V4 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
UBE3BQ7Z3V4 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
UBE3BQ7Z3V4 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
UBE3BQ7Z3V4 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
UBE3BQ7Z3V4 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC18.44■□□□□ 0.54
UBE3BQ7Z3V4 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC18.44■□□□□ 0.54
UBE3BQ7Z3V4 TMBIM7P-202ENST00000641474 1516 ntBASIC18.44■□□□□ 0.54
UBE3BQ7Z3V4 KRT8P28-201ENST00000433288 1390 ntBASIC18.44■□□□□ 0.54
UBE3BQ7Z3V4 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC18.44■□□□□ 0.54
UBE3BQ7Z3V4 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
UBE3BQ7Z3V4 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
UBE3BQ7Z3V4 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
UBE3BQ7Z3V4 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC18.44■□□□□ 0.54
UBE3BQ7Z3V4 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
UBE3BQ7Z3V4 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
UBE3BQ7Z3V4 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
UBE3BQ7Z3V4 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC18.44■□□□□ 0.54
UBE3BQ7Z3V4 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
UBE3BQ7Z3V4 FAS-202ENST00000352159 1722 ntTSL 5 BASIC18.44■□□□□ 0.54
UBE3BQ7Z3V4 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
UBE3BQ7Z3V4 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
UBE3BQ7Z3V4 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
UBE3BQ7Z3V4 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
UBE3BQ7Z3V4 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
UBE3BQ7Z3V4 POLD4-201ENST00000312419 918 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
UBE3BQ7Z3V4 COX8C-201ENST00000342144 533 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
UBE3BQ7Z3V4 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
UBE3BQ7Z3V4 DKFZp779M0652-201ENST00000378779 649 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
UBE3BQ7Z3V4 IGHV3-13-201ENST00000390602 430 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
UBE3BQ7Z3V4 RPL13A-201ENST00000391857 1181 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
UBE3BQ7Z3V4 HNRNPA1P41-201ENST00000397777 928 ntBASIC18.44■□□□□ 0.54
UBE3BQ7Z3V4 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC18.44■□□□□ 0.54
UBE3BQ7Z3V4 HNRNPA1P27-201ENST00000412087 955 ntBASIC18.44■□□□□ 0.54
UBE3BQ7Z3V4 AL008707.1-201ENST00000422498 534 ntBASIC18.44■□□□□ 0.54
UBE3BQ7Z3V4 CMC1-204ENST00000423894 549 ntTSL 2 BASIC18.44■□□□□ 0.54
UBE3BQ7Z3V4 AL139412.1-202ENST00000452465 675 ntTSL 3 BASIC18.44■□□□□ 0.54
UBE3BQ7Z3V4 AC006122.1-201ENST00000493323 440 ntBASIC18.44■□□□□ 0.54
UBE3BQ7Z3V4 YIF1A-210ENST00000496746 667 ntTSL 2 BASIC18.44■□□□□ 0.54
UBE3BQ7Z3V4 AL355310.3-201ENST00000526411 582 ntTSL 3 BASIC18.44■□□□□ 0.54
UBE3BQ7Z3V4 AC239802.2-201ENST00000532137 554 ntTSL 4 BASIC18.44■□□□□ 0.54
UBE3BQ7Z3V4 TMEM91-211ENST00000544232 725 ntTSL 3 BASIC18.44■□□□□ 0.54
UBE3BQ7Z3V4 RHOQP1-201ENST00000555758 579 ntBASIC18.44■□□□□ 0.54
UBE3BQ7Z3V4 ERH-203ENST00000557016 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
UBE3BQ7Z3V4 CDIP1-202ENST00000562334 1205 ntTSL 2 BASIC18.44■□□□□ 0.54
UBE3BQ7Z3V4 GFER-204ENST00000567719 483 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
UBE3BQ7Z3V4 AC097724.1-201ENST00000609581 426 ntBASIC18.44■□□□□ 0.54
UBE3BQ7Z3V4 MUC1-226ENST00000614519 1093 ntTSL 2 BASIC18.44■□□□□ 0.54
UBE3BQ7Z3V4 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC18.44■□□□□ 0.54
UBE3BQ7Z3V4 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
UBE3BQ7Z3V4 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
UBE3BQ7Z3V4 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
UBE3BQ7Z3V4 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
UBE3BQ7Z3V4 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC18.44■□□□□ 0.54
UBE3BQ7Z3V4 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
UBE3BQ7Z3V4 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC18.44■□□□□ 0.54
UBE3BQ7Z3V4 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC18.44■□□□□ 0.54
UBE3BQ7Z3V4 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
UBE3BQ7Z3V4 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC18.44■□□□□ 0.54
UBE3BQ7Z3V4 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC18.44■□□□□ 0.54
UBE3BQ7Z3V4 AC144522.1-201ENST00000625111 1658 ntBASIC18.44■□□□□ 0.54
UBE3BQ7Z3V4 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
UBE3BQ7Z3V4 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
UBE3BQ7Z3V4 AC090515.2-201ENST00000500929 1396 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
UBE3BQ7Z3V4 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
UBE3BQ7Z3V4 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
UBE3BQ7Z3V4 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
UBE3BQ7Z3V4 AP000552.1-203ENST00000416615 1930 ntTSL 5 BASIC18.43■□□□□ 0.54
UBE3BQ7Z3V4 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
UBE3BQ7Z3V4 SGCE-204ENST00000428696 1409 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
UBE3BQ7Z3V4 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC18.43■□□□□ 0.54
UBE3BQ7Z3V4 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
UBE3BQ7Z3V4 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
UBE3BQ7Z3V4 PTPA-215ENST00000432124 567 ntTSL 4 BASIC18.43■□□□□ 0.54
UBE3BQ7Z3V4 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
UBE3BQ7Z3V4 AP000696.1-201ENST00000457669 1133 ntTSL 3 BASIC18.43■□□□□ 0.54
UBE3BQ7Z3V4 RCC2P8-201ENST00000502779 1035 ntBASIC18.43■□□□□ 0.54
UBE3BQ7Z3V4 FADS2-212ENST00000522639 360 ntTSL 5 BASIC18.43■□□□□ 0.54
UBE3BQ7Z3V4 FADS2-215ENST00000574708 385 ntTSL 3 BASIC18.43■□□□□ 0.54
UBE3BQ7Z3V4 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
UBE3BQ7Z3V4 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC18.43■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 63.3 ms