Protein–RNA interactions for Protein: Q5M7Z0

RNFT1, E3 ubiquitin-protein ligase RNFT1, humanhuman

Predictions only

Length 435 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNFT1Q5M7Z0 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC13.37□□□□□ -0.27
RNFT1Q5M7Z0 EVA1A-202ENST00000393913 1802 ntAPPRIS P2 TSL 1 (best) BASIC13.37□□□□□ -0.27
RNFT1Q5M7Z0 AC068587.6-202ENST00000641839 5619 ntBASIC13.37□□□□□ -0.27
RNFT1Q5M7Z0 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC13.37□□□□□ -0.27
RNFT1Q5M7Z0 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
RNFT1Q5M7Z0 BOLA3-201ENST00000295326 444 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
RNFT1Q5M7Z0 GSTK1-202ENST00000409500 888 ntTSL 2 BASIC13.37□□□□□ -0.27
RNFT1Q5M7Z0 AL157407.1-201ENST00000435784 904 ntBASIC13.37□□□□□ -0.27
RNFT1Q5M7Z0 AL645933.1-201ENST00000440087 609 ntBASIC13.37□□□□□ -0.27
RNFT1Q5M7Z0 RCC2P8-201ENST00000502779 1035 ntBASIC13.37□□□□□ -0.27
RNFT1Q5M7Z0 AC117500.3-201ENST00000537032 666 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
RNFT1Q5M7Z0 C14orf132-202ENST00000553782 536 ntTSL 4 BASIC13.37□□□□□ -0.27
RNFT1Q5M7Z0 GFER-204ENST00000567719 483 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
RNFT1Q5M7Z0 HCG18-245ENST00000602550 559 ntTSL 4 BASIC13.37□□□□□ -0.27
RNFT1Q5M7Z0 AP000346.4-201ENST00000614827 381 ntBASIC13.37□□□□□ -0.27
RNFT1Q5M7Z0 AC007386.2-202ENST00000622718 1018 ntTSL 3 BASIC13.37□□□□□ -0.27
RNFT1Q5M7Z0 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
RNFT1Q5M7Z0 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
RNFT1Q5M7Z0 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
RNFT1Q5M7Z0 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
RNFT1Q5M7Z0 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC13.37□□□□□ -0.27
RNFT1Q5M7Z0 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC13.37□□□□□ -0.27
RNFT1Q5M7Z0 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC13.37□□□□□ -0.27
RNFT1Q5M7Z0 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC13.37□□□□□ -0.27
RNFT1Q5M7Z0 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
RNFT1Q5M7Z0 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC13.37□□□□□ -0.27
RNFT1Q5M7Z0 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
RNFT1Q5M7Z0 SLC6A9-203ENST00000372306 1926 ntTSL 2 BASIC13.37□□□□□ -0.27
RNFT1Q5M7Z0 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
RNFT1Q5M7Z0 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC13.37□□□□□ -0.27
RNFT1Q5M7Z0 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC13.36□□□□□ -0.27
RNFT1Q5M7Z0 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC13.36□□□□□ -0.27
RNFT1Q5M7Z0 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC13.36□□□□□ -0.27
RNFT1Q5M7Z0 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC13.36□□□□□ -0.27
RNFT1Q5M7Z0 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
RNFT1Q5M7Z0 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
RNFT1Q5M7Z0 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
RNFT1Q5M7Z0 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
RNFT1Q5M7Z0 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
RNFT1Q5M7Z0 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC13.36□□□□□ -0.27
RNFT1Q5M7Z0 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
RNFT1Q5M7Z0 AC013268.4-201ENST00000637413 2228 ntBASIC13.36□□□□□ -0.27
RNFT1Q5M7Z0 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
RNFT1Q5M7Z0 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC13.36□□□□□ -0.27
RNFT1Q5M7Z0 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
RNFT1Q5M7Z0 FOXO4-201ENST00000341558 1353 ntTSL 5 BASIC13.36□□□□□ -0.27
RNFT1Q5M7Z0 BCAS4-201ENST00000358791 1378 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
RNFT1Q5M7Z0 FAM45A-201ENST00000361432 1648 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
RNFT1Q5M7Z0 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
RNFT1Q5M7Z0 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
RNFT1Q5M7Z0 LINC01101-201ENST00000622953 1884 ntBASIC13.36□□□□□ -0.27
RNFT1Q5M7Z0 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
RNFT1Q5M7Z0 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC13.36□□□□□ -0.27
RNFT1Q5M7Z0 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
RNFT1Q5M7Z0 ALG1L-201ENST00000340333 805 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
RNFT1Q5M7Z0 PSMB5-202ENST00000361611 1294 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
RNFT1Q5M7Z0 ISCA2P1-201ENST00000425548 448 ntBASIC13.36□□□□□ -0.27
RNFT1Q5M7Z0 PSMB5-203ENST00000425762 900 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
RNFT1Q5M7Z0 DLGAP4-AS1-202ENST00000433238 593 ntTSL 3 BASIC13.36□□□□□ -0.27
RNFT1Q5M7Z0 PTPA-217ENST00000434095 870 ntTSL 2 BASIC13.36□□□□□ -0.27
RNFT1Q5M7Z0 AL596276.2-201ENST00000447525 331 ntBASIC13.36□□□□□ -0.27
RNFT1Q5M7Z0 EIF2S2P5-201ENST00000457635 968 ntBASIC13.36□□□□□ -0.27
RNFT1Q5M7Z0 SUPT4H1P2-201ENST00000501248 353 ntBASIC13.36□□□□□ -0.27
RNFT1Q5M7Z0 AC008438.1-201ENST00000507521 549 ntTSL 2 BASIC13.36□□□□□ -0.27
RNFT1Q5M7Z0 GUSBP1-202ENST00000508260 1012 ntTSL 2 BASIC13.36□□□□□ -0.27
RNFT1Q5M7Z0 LINC01848-201ENST00000523446 518 ntTSL 3 BASIC13.36□□□□□ -0.27
RNFT1Q5M7Z0 NDUFC2-204ENST00000528164 561 ntTSL 2 BASIC13.36□□□□□ -0.27
RNFT1Q5M7Z0 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC13.36□□□□□ -0.27
RNFT1Q5M7Z0 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC13.36□□□□□ -0.27
RNFT1Q5M7Z0 AC103988.2-201ENST00000561804 725 ntBASIC13.36□□□□□ -0.27
RNFT1Q5M7Z0 PAM16-211ENST00000575848 518 ntTSL 3 BASIC13.36□□□□□ -0.27
RNFT1Q5M7Z0 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
RNFT1Q5M7Z0 MIR3907-201ENST00000579424 151 ntBASIC13.36□□□□□ -0.27
RNFT1Q5M7Z0 AL645941.3-201ENST00000580587 577 ntTSL 4 BASIC13.36□□□□□ -0.27
RNFT1Q5M7Z0 AC009884.2-201ENST00000603110 324 ntBASIC13.36□□□□□ -0.27
RNFT1Q5M7Z0 ALG1L-202ENST00000611639 701 ntAPPRIS ALT2 TSL 3 BASIC13.36□□□□□ -0.27
RNFT1Q5M7Z0 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC13.36□□□□□ -0.27
RNFT1Q5M7Z0 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
RNFT1Q5M7Z0 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
RNFT1Q5M7Z0 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
RNFT1Q5M7Z0 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
RNFT1Q5M7Z0 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
RNFT1Q5M7Z0 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
RNFT1Q5M7Z0 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
RNFT1Q5M7Z0 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
RNFT1Q5M7Z0 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC13.36□□□□□ -0.27
RNFT1Q5M7Z0 DHX36-213ENST00000496811 6733 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
RNFT1Q5M7Z0 KIAA2026-201ENST00000381461 6884 ntTSL 5 BASIC13.36□□□□□ -0.27
RNFT1Q5M7Z0 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC13.36□□□□□ -0.27
RNFT1Q5M7Z0 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
RNFT1Q5M7Z0 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
RNFT1Q5M7Z0 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
RNFT1Q5M7Z0 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
RNFT1Q5M7Z0 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
RNFT1Q5M7Z0 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
RNFT1Q5M7Z0 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC13.35□□□□□ -0.27
RNFT1Q5M7Z0 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
RNFT1Q5M7Z0 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC13.35□□□□□ -0.27
RNFT1Q5M7Z0 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
RNFT1Q5M7Z0 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms