Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC17.32■□□□□ 0.36
CCDC144BQ3MJ40 MTHFR-210ENST00000641407 2387 ntBASIC17.32■□□□□ 0.36
CCDC144BQ3MJ40 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
CCDC144BQ3MJ40 PPP1R26P4-201ENST00000619065 3527 ntBASIC17.32■□□□□ 0.36
CCDC144BQ3MJ40 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC144BQ3MJ40 TOP3B-201ENST00000357179 2863 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC144BQ3MJ40 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC144BQ3MJ40 SLC25A18-201ENST00000327451 2244 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC144BQ3MJ40 ACER2-201ENST00000340967 2238 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC144BQ3MJ40 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC144BQ3MJ40 ZBTB17-202ENST00000375743 2745 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC144BQ3MJ40 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC17.32■□□□□ 0.36
CCDC144BQ3MJ40 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC144BQ3MJ40 CHRNB4-201ENST00000261751 2623 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC144BQ3MJ40 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC17.32■□□□□ 0.36
CCDC144BQ3MJ40 AC018735.1-201ENST00000437208 1502 ntBASIC17.31■□□□□ 0.36
CCDC144BQ3MJ40 AC148477.2-201ENST00000537762 3039 ntTSL 3 BASIC17.31■□□□□ 0.36
CCDC144BQ3MJ40 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC144BQ3MJ40 ABHD18-206ENST00000611882 1493 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC144BQ3MJ40 AC138028.6-201ENST00000616106 1482 ntBASIC17.31■□□□□ 0.36
CCDC144BQ3MJ40 SLC38A9-202ENST00000396865 2927 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC144BQ3MJ40 ICA1-207ENST00000406470 2440 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC144BQ3MJ40 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC144BQ3MJ40 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC144BQ3MJ40 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC144BQ3MJ40 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
CCDC144BQ3MJ40 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC17.31■□□□□ 0.36
CCDC144BQ3MJ40 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC144BQ3MJ40 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC144BQ3MJ40 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC144BQ3MJ40 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC144BQ3MJ40 SPATS2L-209ENST00000409988 2698 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
CCDC144BQ3MJ40 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC17.31■□□□□ 0.36
CCDC144BQ3MJ40 CUL1-201ENST00000325222 3064 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC144BQ3MJ40 SFXN3-202ENST00000393459 3098 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
CCDC144BQ3MJ40 UNQ6494-202ENST00000617436 2163 ntTSL 2 BASIC17.31■□□□□ 0.36
CCDC144BQ3MJ40 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
CCDC144BQ3MJ40 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC144BQ3MJ40 RPS15-201ENST00000233609 534 ntTSL 2 BASIC17.31■□□□□ 0.36
CCDC144BQ3MJ40 RAB2A-201ENST00000262646 3848 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC144BQ3MJ40 HNRNPH1-201ENST00000329433 2114 ntTSL 2 BASIC17.31■□□□□ 0.36
CCDC144BQ3MJ40 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC144BQ3MJ40 THEG-202ENST00000346878 1211 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
CCDC144BQ3MJ40 AL138767.1-201ENST00000354527 744 ntTSL 3 BASIC17.31■□□□□ 0.36
CCDC144BQ3MJ40 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC144BQ3MJ40 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC144BQ3MJ40 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC144BQ3MJ40 C9orf24-203ENST00000379126 496 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC144BQ3MJ40 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC17.31■□□□□ 0.36
CCDC144BQ3MJ40 LINC01840-201ENST00000421870 571 ntTSL 4 BASIC17.31■□□□□ 0.36
CCDC144BQ3MJ40 FNTAP2-201ENST00000430308 634 ntBASIC17.31■□□□□ 0.36
CCDC144BQ3MJ40 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC17.31■□□□□ 0.36
CCDC144BQ3MJ40 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC17.31■□□□□ 0.36
CCDC144BQ3MJ40 APOA2-204ENST00000464492 530 ntTSL 3 BASIC17.31■□□□□ 0.36
CCDC144BQ3MJ40 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC17.31■□□□□ 0.36
CCDC144BQ3MJ40 SCARNA20.5-201ENST00000516991 142 ntBASIC17.31■□□□□ 0.36
CCDC144BQ3MJ40 NEU3-202ENST00000526068 431 ntTSL 2 BASIC17.31■□□□□ 0.36
CCDC144BQ3MJ40 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC17.31■□□□□ 0.36
CCDC144BQ3MJ40 RPS15-205ENST00000586686 562 ntTSL 5 BASIC17.31■□□□□ 0.36
CCDC144BQ3MJ40 RPS15-208ENST00000591804 711 ntTSL 5 BASIC17.31■□□□□ 0.36
CCDC144BQ3MJ40 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC144BQ3MJ40 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC17.31■□□□□ 0.36
CCDC144BQ3MJ40 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC17.31■□□□□ 0.36
CCDC144BQ3MJ40 ENPP7P14-201ENST00000621765 1040 ntBASIC17.31■□□□□ 0.36
CCDC144BQ3MJ40 IRAK4-212ENST00000551736 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC144BQ3MJ40 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC17.31■□□□□ 0.36
CCDC144BQ3MJ40 NADSYN1-216ENST00000530055 2416 ntTSL 2 BASIC17.31■□□□□ 0.36
CCDC144BQ3MJ40 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC144BQ3MJ40 P4HA1-205ENST00000440381 2790 ntTSL 3 BASIC17.31■□□□□ 0.36
CCDC144BQ3MJ40 AC007787.1-201ENST00000588095 1583 ntBASIC17.31■□□□□ 0.36
CCDC144BQ3MJ40 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC144BQ3MJ40 SLC25A21-AS1-201ENST00000556667 1924 ntBASIC17.31■□□□□ 0.36
CCDC144BQ3MJ40 SEPT6-204ENST00000360156 2609 ntAPPRIS ALT1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC144BQ3MJ40 PTPRA-201ENST00000216877 3725 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC144BQ3MJ40 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC17.31■□□□□ 0.36
CCDC144BQ3MJ40 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC144BQ3MJ40 GPR132-203ENST00000539291 2779 ntAPPRIS P3 TSL 2 BASIC17.3■□□□□ 0.36
CCDC144BQ3MJ40 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC17.3■□□□□ 0.36
CCDC144BQ3MJ40 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC17.3■□□□□ 0.36
CCDC144BQ3MJ40 AL023775.1-201ENST00000454907 1746 ntBASIC17.3■□□□□ 0.36
CCDC144BQ3MJ40 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC17.3■□□□□ 0.36
CCDC144BQ3MJ40 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC144BQ3MJ40 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC144BQ3MJ40 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
CCDC144BQ3MJ40 PCDHGB8P-201ENST00000502926 1973 ntBASIC17.3■□□□□ 0.36
CCDC144BQ3MJ40 FAM120A-202ENST00000375389 3585 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC144BQ3MJ40 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC17.3■□□□□ 0.36
CCDC144BQ3MJ40 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC144BQ3MJ40 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC144BQ3MJ40 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC144BQ3MJ40 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC144BQ3MJ40 ZNF248-202ENST00000374648 1286 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC144BQ3MJ40 CTNNBIP1-202ENST00000377258 852 ntAPPRIS P1 TSL 3 BASIC17.3■□□□□ 0.36
CCDC144BQ3MJ40 MIR663B-201ENST00000408361 115 ntBASIC17.3■□□□□ 0.36
CCDC144BQ3MJ40 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC17.3■□□□□ 0.36
CCDC144BQ3MJ40 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC17.3■□□□□ 0.36
CCDC144BQ3MJ40 AC022903.1-201ENST00000579327 469 ntTSL 2 BASIC17.3■□□□□ 0.36
CCDC144BQ3MJ40 INO80C-210ENST00000590757 595 ntTSL 2 BASIC17.3■□□□□ 0.36
CCDC144BQ3MJ40 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC144BQ3MJ40 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms