Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 TTC28-AS1-212ENST00000433317 3080 ntTSL 5 BASIC14.44□□□□□ -0.1
FOXA1P55317 PROM2-203ENST00000403131 2922 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
FOXA1P55317 ZNF596-201ENST00000308811 2783 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
FOXA1P55317 ERC1-219ENST00000546231 4390 ntTSL 5 BASIC14.44□□□□□ -0.1
FOXA1P55317 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC14.44□□□□□ -0.1
FOXA1P55317 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
FOXA1P55317 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
FOXA1P55317 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
FOXA1P55317 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
FOXA1P55317 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
FOXA1P55317 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
FOXA1P55317 SERBP1P5-201ENST00000510079 1181 ntBASIC14.44□□□□□ -0.1
FOXA1P55317 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC14.44□□□□□ -0.1
FOXA1P55317 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC14.44□□□□□ -0.1
FOXA1P55317 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC14.44□□□□□ -0.1
FOXA1P55317 AC092364.2-202ENST00000597012 1073 ntBASIC14.44□□□□□ -0.1
FOXA1P55317 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
FOXA1P55317 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
FOXA1P55317 RILPL1-202ENST00000376874 3932 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
FOXA1P55317 FRMD8-202ENST00000355991 3514 ntTSL 2 BASIC14.44□□□□□ -0.1
FOXA1P55317 MBLAC2-202ENST00000514906 1936 ntBASIC14.44□□□□□ -0.1
FOXA1P55317 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
FOXA1P55317 LRRC59-203ENST00000576448 1531 ntBASIC14.44□□□□□ -0.1
FOXA1P55317 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
FOXA1P55317 AL136172.1-201ENST00000598590 1394 ntBASIC14.44□□□□□ -0.1
FOXA1P55317 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
FOXA1P55317 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
FOXA1P55317 MBD1-201ENST00000269468 3259 ntAPPRIS P3 TSL 5 BASIC14.44□□□□□ -0.1
FOXA1P55317 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
FOXA1P55317 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC14.44□□□□□ -0.1
FOXA1P55317 CORO7-201ENST00000251166 3540 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
FOXA1P55317 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC14.44□□□□□ -0.1
FOXA1P55317 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
FOXA1P55317 TOP3B-201ENST00000357179 2863 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
FOXA1P55317 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC14.44□□□□□ -0.1
FOXA1P55317 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC14.43□□□□□ -0.1
FOXA1P55317 GPN1-201ENST00000264718 2496 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
FOXA1P55317 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC14.43□□□□□ -0.1
FOXA1P55317 PTPRA-201ENST00000216877 3725 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
FOXA1P55317 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
FOXA1P55317 BRD1-205ENST00000457780 4997 ntTSL 5 BASIC14.43□□□□□ -0.1
FOXA1P55317 PRCP-201ENST00000313010 3090 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
FOXA1P55317 CDCA3-207ENST00000538862 1943 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
FOXA1P55317 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
FOXA1P55317 GPR37-201ENST00000303921 3021 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
FOXA1P55317 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
FOXA1P55317 AC011498.7-201ENST00000624986 2027 ntBASIC14.43□□□□□ -0.1
FOXA1P55317 GOLGA8VP-201ENST00000559009 1798 ntBASIC14.43□□□□□ -0.1
FOXA1P55317 AC079781.5-202ENST00000641784 3743 ntBASIC14.43□□□□□ -0.1
FOXA1P55317 UGT3A2-201ENST00000282507 2355 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
FOXA1P55317 CNOT9-201ENST00000273064 4079 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
FOXA1P55317 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
FOXA1P55317 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
FOXA1P55317 ACTBP8-201ENST00000403258 1108 ntBASIC14.43□□□□□ -0.1
FOXA1P55317 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC14.43□□□□□ -0.1
FOXA1P55317 HNRNPA1P40-201ENST00000426371 1278 ntBASIC14.43□□□□□ -0.1
FOXA1P55317 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC14.43□□□□□ -0.1
FOXA1P55317 CLUHP6-201ENST00000580789 941 ntBASIC14.43□□□□□ -0.1
FOXA1P55317 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC14.43□□□□□ -0.1
FOXA1P55317 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC14.43□□□□□ -0.1
FOXA1P55317 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC14.43□□□□□ -0.1
FOXA1P55317 AP005019.2-201ENST00000615104 511 ntBASIC14.43□□□□□ -0.1
FOXA1P55317 TMPRSS9-201ENST00000332578 3331 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
FOXA1P55317 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
FOXA1P55317 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
FOXA1P55317 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
FOXA1P55317 SNX20-202ENST00000330943 2904 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
FOXA1P55317 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
FOXA1P55317 ALDH3B1-201ENST00000342456 2786 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
FOXA1P55317 RASSF3-204ENST00000542104 3492 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
FOXA1P55317 ILK-201ENST00000299421 1802 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
FOXA1P55317 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
FOXA1P55317 FAM90A1-203ENST00000538603 2513 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
FOXA1P55317 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
FOXA1P55317 MUTYH-210ENST00000450313 1929 ntTSL 5 BASIC14.43□□□□□ -0.1
FOXA1P55317 RAB6C-201ENST00000410061 3075 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
FOXA1P55317 FGF12-207ENST00000454309 3058 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
FOXA1P55317 MKNK1-204ENST00000371946 2719 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
FOXA1P55317 PIP4K2A-201ENST00000323883 1319 ntTSL 2 BASIC14.42□□□□□ -0.1
FOXA1P55317 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC14.42□□□□□ -0.1
FOXA1P55317 NAALADL1-202ENST00000355721 2100 ntTSL 5 BASIC14.42□□□□□ -0.1
FOXA1P55317 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
FOXA1P55317 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
FOXA1P55317 TCOF1-201ENST00000323668 4832 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
FOXA1P55317 ZMYND15-202ENST00000433935 2411 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
FOXA1P55317 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC14.42□□□□□ -0.1
FOXA1P55317 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC14.42□□□□□ -0.1
FOXA1P55317 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC14.42□□□□□ -0.1
FOXA1P55317 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
FOXA1P55317 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC14.42□□□□□ -0.1
FOXA1P55317 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
FOXA1P55317 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
FOXA1P55317 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
FOXA1P55317 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC14.42□□□□□ -0.1
FOXA1P55317 DFFBP1-201ENST00000433250 979 ntBASIC14.42□□□□□ -0.1
FOXA1P55317 MYCLP2-201ENST00000449268 967 ntBASIC14.42□□□□□ -0.1
FOXA1P55317 FO681548.1-201ENST00000455617 1132 ntBASIC14.42□□□□□ -0.1
FOXA1P55317 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC14.42□□□□□ -0.1
FOXA1P55317 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC14.42□□□□□ -0.1
FOXA1P55317 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC14.42□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms