Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 FXYD6-FXYD2-202ENST00000614497 634 ntAPPRIS P1 TSL 3 BASIC17.02■□□□□ 0.32
HMGCS2P54868 PRKAB1-210ENST00000630317 258 ntTSL 2 BASIC17.02■□□□□ 0.32
HMGCS2P54868 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
HMGCS2P54868 THUMPD3-AS1-212ENST00000520447 1809 ntTSL 5 BASIC17.02■□□□□ 0.31
HMGCS2P54868 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC17.02■□□□□ 0.31
HMGCS2P54868 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.31
HMGCS2P54868 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
HMGCS2P54868 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.31
HMGCS2P54868 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC17.02■□□□□ 0.31
HMGCS2P54868 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC17.02■□□□□ 0.31
HMGCS2P54868 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.31
HMGCS2P54868 LINC00554-201ENST00000564841 3011 ntBASIC17.02■□□□□ 0.31
HMGCS2P54868 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
HMGCS2P54868 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HMGCS2P54868 AC008741.2-201ENST00000612792 3115 ntBASIC17.01■□□□□ 0.31
HMGCS2P54868 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HMGCS2P54868 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
HMGCS2P54868 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HMGCS2P54868 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HMGCS2P54868 AHCYP4-201ENST00000419201 1315 ntBASIC17.01■□□□□ 0.31
HMGCS2P54868 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC17.01■□□□□ 0.31
HMGCS2P54868 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
HMGCS2P54868 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
HMGCS2P54868 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
HMGCS2P54868 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
HMGCS2P54868 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC17.01■□□□□ 0.31
HMGCS2P54868 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
HMGCS2P54868 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HMGCS2P54868 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HMGCS2P54868 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HMGCS2P54868 PRIMA1-201ENST00000316227 1080 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
HMGCS2P54868 AL118508.1-202ENST00000411595 709 ntTSL 2 BASIC17.01■□□□□ 0.31
HMGCS2P54868 AL807761.2-201ENST00000422849 729 ntBASIC17.01■□□□□ 0.31
HMGCS2P54868 AC254562.2-201ENST00000428786 667 ntTSL 3 BASIC17.01■□□□□ 0.31
HMGCS2P54868 AL137856.1-201ENST00000429398 773 ntTSL 3 BASIC17.01■□□□□ 0.31
HMGCS2P54868 ENDOV-229ENST00000523999 864 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
HMGCS2P54868 TMEM223-202ENST00000525631 736 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
HMGCS2P54868 AC003686.1-201ENST00000550956 1034 ntBASIC17.01■□□□□ 0.31
HMGCS2P54868 FKBP11-212ENST00000552878 1052 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
HMGCS2P54868 AC010531.4-203ENST00000561709 660 ntTSL 3 BASIC17.01■□□□□ 0.31
HMGCS2P54868 DNM1P30-201ENST00000563586 452 ntBASIC17.01■□□□□ 0.31
HMGCS2P54868 AC093752.3-201ENST00000567343 901 ntBASIC17.01■□□□□ 0.31
HMGCS2P54868 TPGS2-209ENST00000589049 1102 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
HMGCS2P54868 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
HMGCS2P54868 FAM151A-202ENST00000371304 1444 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
HMGCS2P54868 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
HMGCS2P54868 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HMGCS2P54868 AL590440.2-201ENST00000641973 1595 ntBASIC17.01■□□□□ 0.31
HMGCS2P54868 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
HMGCS2P54868 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HMGCS2P54868 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
HMGCS2P54868 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
HMGCS2P54868 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
HMGCS2P54868 SERPINF1-201ENST00000254722 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HMGCS2P54868 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
HMGCS2P54868 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
HMGCS2P54868 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC17■□□□□ 0.31
HMGCS2P54868 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
HMGCS2P54868 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC17■□□□□ 0.31
HMGCS2P54868 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC17■□□□□ 0.31
HMGCS2P54868 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
HMGCS2P54868 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC17■□□□□ 0.31
HMGCS2P54868 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
HMGCS2P54868 KRTAP19-5-201ENST00000334151 461 ntAPPRIS P1 BASIC17■□□□□ 0.31
HMGCS2P54868 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC17■□□□□ 0.31
HMGCS2P54868 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
HMGCS2P54868 CSTF3-202ENST00000431742 715 ntTSL 2 BASIC17■□□□□ 0.31
HMGCS2P54868 AL365295.1-203ENST00000435322 566 ntTSL 4 BASIC17■□□□□ 0.31
HMGCS2P54868 LINC00466-203ENST00000436475 1059 ntTSL 5 BASIC17■□□□□ 0.31
HMGCS2P54868 DUTP3-201ENST00000450025 415 ntBASIC17■□□□□ 0.31
HMGCS2P54868 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC17■□□□□ 0.31
HMGCS2P54868 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC17■□□□□ 0.31
HMGCS2P54868 APOC1P1-201ENST00000507983 630 ntTSL 4 BASIC17■□□□□ 0.31
HMGCS2P54868 PCMTD1-207ENST00000522514 1287 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
HMGCS2P54868 EIF3K-202ENST00000538434 966 ntTSL 2 BASIC17■□□□□ 0.31
HMGCS2P54868 RPL19-207ENST00000582193 792 ntAPPRIS ALT1 TSL 5 BASIC17■□□□□ 0.31
HMGCS2P54868 RPL17P45-201ENST00000586289 509 ntBASIC17■□□□□ 0.31
HMGCS2P54868 LDLRAD4-208ENST00000586765 844 ntTSL 2 BASIC17■□□□□ 0.31
HMGCS2P54868 AC007326.1-201ENST00000604539 458 ntBASIC17■□□□□ 0.31
HMGCS2P54868 HLA-C-210ENST00000640219 976 ntBASIC17■□□□□ 0.31
HMGCS2P54868 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
HMGCS2P54868 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC17■□□□□ 0.31
HMGCS2P54868 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
HMGCS2P54868 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC17■□□□□ 0.31
HMGCS2P54868 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
HMGCS2P54868 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC17■□□□□ 0.31
HMGCS2P54868 AC092135.3-201ENST00000624151 1846 ntBASIC17■□□□□ 0.31
HMGCS2P54868 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC17■□□□□ 0.31
HMGCS2P54868 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
HMGCS2P54868 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
HMGCS2P54868 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
HMGCS2P54868 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC17■□□□□ 0.31
HMGCS2P54868 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
HMGCS2P54868 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
HMGCS2P54868 TMEM144-209ENST00000509278 1633 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
HMGCS2P54868 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
HMGCS2P54868 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC16.99■□□□□ 0.31
HMGCS2P54868 LINC01229-201ENST00000561510 1494 ntTSL 5 BASIC16.99■□□□□ 0.31
HMGCS2P54868 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC16.99■□□□□ 0.31
HMGCS2P54868 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC16.99■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms