Protein–RNA interactions for Protein: P52948

NUP98, Nuclear pore complex protein Nup98-Nup96, humanhuman

Predictions only

Length 1,817 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98P52948 PPM1N-201ENST00000396735 895 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
NUP98P52948 PPM1N-208ENST00000456399 618 ntTSL 3 BASIC18.07■□□□□ 0.48
NUP98P52948 LINC02435-201ENST00000508291 584 ntTSL 3 BASIC18.07■□□□□ 0.48
NUP98P52948 C12orf10-207ENST00000549488 840 ntTSL 5 BASIC18.07■□□□□ 0.48
NUP98P52948 AC005586.2-201ENST00000563946 837 ntBASIC18.07■□□□□ 0.48
NUP98P52948 UPF3AP2-202ENST00000578315 730 ntTSL 5 BASIC18.07■□□□□ 0.48
NUP98P52948 RNASEK-210ENST00000593646 566 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
NUP98P52948 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
NUP98P52948 CYP51A1P3-201ENST00000400072 1428 ntBASIC18.07■□□□□ 0.48
NUP98P52948 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
NUP98P52948 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC18.06■□□□□ 0.48
NUP98P52948 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
NUP98P52948 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC18.06■□□□□ 0.48
NUP98P52948 TEKT4P2-202ENST00000559466 1312 ntBASIC18.06■□□□□ 0.48
NUP98P52948 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC18.06■□□□□ 0.48
NUP98P52948 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC18.06■□□□□ 0.48
NUP98P52948 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC18.06■□□□□ 0.48
NUP98P52948 TRMT10B-207ENST00000537911 2108 ntTSL 2 BASIC18.06■□□□□ 0.48
NUP98P52948 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
NUP98P52948 MBD1-225ENST00000591535 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
NUP98P52948 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
NUP98P52948 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
NUP98P52948 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC18.06■□□□□ 0.48
NUP98P52948 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
NUP98P52948 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC18.06■□□□□ 0.48
NUP98P52948 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
NUP98P52948 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
NUP98P52948 PIGL-201ENST00000225609 1137 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
NUP98P52948 TMEM216-202ENST00000398979 908 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
NUP98P52948 KRT18P66-201ENST00000452970 1269 ntBASIC18.06■□□□□ 0.48
NUP98P52948 POLD4-206ENST00000530584 899 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
NUP98P52948 LINC01154-201ENST00000548617 454 ntTSL 3 BASIC18.06■□□□□ 0.48
NUP98P52948 AC011481.2-201ENST00000585408 426 ntTSL 3 BASIC18.06■□□□□ 0.48
NUP98P52948 PGPEP1-203ENST00000595066 762 ntTSL 2 BASIC18.06■□□□□ 0.48
NUP98P52948 AC104333.4-201ENST00000632866 554 ntTSL 3 BASIC18.06■□□□□ 0.48
NUP98P52948 WDR5-201ENST00000358625 3151 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
NUP98P52948 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
NUP98P52948 SLC25A20-202ENST00000430379 1576 ntTSL 3 BASIC18.06■□□□□ 0.48
NUP98P52948 FAM76A-203ENST00000373949 2273 ntTSL 2 BASIC18.06■□□□□ 0.48
NUP98P52948 HIF3A-206ENST00000472815 1709 ntTSL 2 BASIC18.06■□□□□ 0.48
NUP98P52948 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC18.06■□□□□ 0.48
NUP98P52948 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC18.06■□□□□ 0.48
NUP98P52948 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
NUP98P52948 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC18.06■□□□□ 0.48
NUP98P52948 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
NUP98P52948 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
NUP98P52948 CHCHD7-202ENST00000355315 1535 ntTSL 2 BASIC18.05■□□□□ 0.48
NUP98P52948 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
NUP98P52948 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
NUP98P52948 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC18.05■□□□□ 0.48
NUP98P52948 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
NUP98P52948 IL23A-201ENST00000228534 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
NUP98P52948 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
NUP98P52948 OPN1MW2-201ENST00000369929 1261 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
NUP98P52948 CYB561D1-207ENST00000527072 892 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
NUP98P52948 AL132994.1-201ENST00000554098 400 ntBASIC18.05■□□□□ 0.48
NUP98P52948 MAX-218ENST00000557746 571 ntTSL 4 BASIC18.05■□□□□ 0.48
NUP98P52948 HERC2P11-201ENST00000562845 725 ntBASIC18.05■□□□□ 0.48
NUP98P52948 AC100756.2-201ENST00000569537 736 ntBASIC18.05■□□□□ 0.48
NUP98P52948 AC138466.5-201ENST00000624002 808 ntBASIC18.05■□□□□ 0.48
NUP98P52948 AC002044.2-201ENST00000624910 970 ntBASIC18.05■□□□□ 0.48
NUP98P52948 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
NUP98P52948 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC18.05■□□□□ 0.48
NUP98P52948 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
NUP98P52948 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC18.05■□□□□ 0.48
NUP98P52948 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
NUP98P52948 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC18.05■□□□□ 0.48
NUP98P52948 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
NUP98P52948 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC18.05■□□□□ 0.48
NUP98P52948 MKRN2-201ENST00000170447 2848 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
NUP98P52948 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC18.05■□□□□ 0.48
NUP98P52948 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
NUP98P52948 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC18.05■□□□□ 0.48
NUP98P52948 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
NUP98P52948 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC18.05■□□□□ 0.48
NUP98P52948 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
NUP98P52948 LY86-201ENST00000230568 559 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
NUP98P52948 AK1-202ENST00000373156 757 ntAPPRIS P1 TSL 3 BASIC18.05■□□□□ 0.48
NUP98P52948 MAPK13-202ENST00000373759 1036 ntTSL 5 BASIC18.05■□□□□ 0.48
NUP98P52948 TP53I3-203ENST00000407482 747 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
NUP98P52948 CELP-201ENST00000411440 1249 ntTSL 5 BASIC18.05■□□□□ 0.48
NUP98P52948 AL391415.1-201ENST00000439844 400 ntTSL 3 BASIC18.05■□□□□ 0.48
NUP98P52948 AC011247.2-201ENST00000457097 233 ntTSL 4 BASIC18.05■□□□□ 0.48
NUP98P52948 LINC00634-202ENST00000505157 222 ntBASIC18.05■□□□□ 0.48
NUP98P52948 AC010285.2-201ENST00000510240 569 ntTSL 4 BASIC18.05■□□□□ 0.48
NUP98P52948 RPS25-202ENST00000527673 835 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
NUP98P52948 AP003390.1-201ENST00000533253 523 ntTSL 5 BASIC18.05■□□□□ 0.48
NUP98P52948 AC090825.1-202ENST00000560059 665 ntTSL 3 BASIC18.05■□□□□ 0.48
NUP98P52948 SIGLEC22P-201ENST00000599104 714 ntBASIC18.05■□□□□ 0.48
NUP98P52948 SIGLEC22P-202ENST00000602065 544 ntTSL 4 BASIC18.05■□□□□ 0.48
NUP98P52948 NOP16-211ENST00000621444 954 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
NUP98P52948 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
NUP98P52948 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC18.04■□□□□ 0.48
NUP98P52948 ACTL7A-201ENST00000333999 1494 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
NUP98P52948 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC18.04■□□□□ 0.48
NUP98P52948 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
NUP98P52948 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
NUP98P52948 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
NUP98P52948 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
NUP98P52948 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 43.5 ms