Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 FAM90A7P-201ENST00000382628 1395 ntBASIC13.02□□□□□ -0.33
COL8A1P27658 FAM90A23P-201ENST00000400136 1395 ntBASIC13.02□□□□□ -0.33
COL8A1P27658 AC090502.4-201ENST00000551714 1386 ntBASIC13.02□□□□□ -0.33
COL8A1P27658 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.33
COL8A1P27658 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC13.02□□□□□ -0.33
COL8A1P27658 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.33
COL8A1P27658 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
COL8A1P27658 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC13.02□□□□□ -0.33
COL8A1P27658 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
COL8A1P27658 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
COL8A1P27658 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
COL8A1P27658 CHD4-201ENST00000357008 6496 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.33
COL8A1P27658 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
COL8A1P27658 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
COL8A1P27658 PAUPAR-201ENST00000630360 2965 ntBASIC13.02□□□□□ -0.33
COL8A1P27658 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
COL8A1P27658 EVA1A-202ENST00000393913 1802 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.33
COL8A1P27658 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
COL8A1P27658 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC13.01□□□□□ -0.33
COL8A1P27658 MLLT6-211ENST00000621332 7578 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
COL8A1P27658 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
COL8A1P27658 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
COL8A1P27658 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
COL8A1P27658 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
COL8A1P27658 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC13.01□□□□□ -0.33
COL8A1P27658 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC13.01□□□□□ -0.33
COL8A1P27658 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
COL8A1P27658 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC13.01□□□□□ -0.33
COL8A1P27658 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC13.01□□□□□ -0.33
COL8A1P27658 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
COL8A1P27658 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
COL8A1P27658 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
COL8A1P27658 BAK1P1-201ENST00000317045 636 ntBASIC13.01□□□□□ -0.33
COL8A1P27658 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC13.01□□□□□ -0.33
COL8A1P27658 CRIP3-202ENST00000372569 962 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
COL8A1P27658 KLK11-203ENST00000391804 930 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
COL8A1P27658 INS-IGF2-202ENST00000397270 828 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
COL8A1P27658 FAM27E5-201ENST00000426869 682 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
COL8A1P27658 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC13.01□□□□□ -0.33
COL8A1P27658 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC13.01□□□□□ -0.33
COL8A1P27658 AC004540.1-204ENST00000449537 727 ntTSL 2 BASIC13.01□□□□□ -0.33
COL8A1P27658 ZAP70-202ENST00000451498 1085 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
COL8A1P27658 FABP5P3-202ENST00000477993 1027 ntTSL 5 BASIC13.01□□□□□ -0.33
COL8A1P27658 AC130709.1-201ENST00000484779 1212 ntBASIC13.01□□□□□ -0.33
COL8A1P27658 NDUFS6P1-201ENST00000485187 316 ntBASIC13.01□□□□□ -0.33
COL8A1P27658 AC024475.1-201ENST00000528480 605 ntTSL 5 BASIC13.01□□□□□ -0.33
COL8A1P27658 TMCO5B-205ENST00000530020 894 ntBASIC13.01□□□□□ -0.33
COL8A1P27658 AC027139.1-201ENST00000565286 951 ntBASIC13.01□□□□□ -0.33
COL8A1P27658 LINC01569-203ENST00000573268 694 ntTSL 3 BASIC13.01□□□□□ -0.33
COL8A1P27658 AC008133.1-201ENST00000584688 557 ntTSL 4 BASIC13.01□□□□□ -0.33
COL8A1P27658 PIN1-207ENST00000588695 648 ntAPPRIS P1 TSL 2 BASIC13.01□□□□□ -0.33
COL8A1P27658 PRSS45-202ENST00000620911 1041 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
COL8A1P27658 AC025262.2-201ENST00000623975 1056 ntBASIC13.01□□□□□ -0.33
COL8A1P27658 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
COL8A1P27658 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
COL8A1P27658 AC244394.1-201ENST00000435000 1665 ntBASIC13.01□□□□□ -0.33
COL8A1P27658 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
COL8A1P27658 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
COL8A1P27658 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
COL8A1P27658 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
COL8A1P27658 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC13.01□□□□□ -0.33
COL8A1P27658 NR3C1-203ENST00000394464 6795 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
COL8A1P27658 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC13.01□□□□□ -0.33
COL8A1P27658 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
COL8A1P27658 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
COL8A1P27658 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC13.01□□□□□ -0.33
COL8A1P27658 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
COL8A1P27658 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
COL8A1P27658 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
COL8A1P27658 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
COL8A1P27658 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
COL8A1P27658 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
COL8A1P27658 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
COL8A1P27658 IPO8-201ENST00000256079 5325 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
COL8A1P27658 DIP2A-201ENST00000400274 7023 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
COL8A1P27658 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
COL8A1P27658 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
COL8A1P27658 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC13□□□□□ -0.33
COL8A1P27658 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
COL8A1P27658 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC13□□□□□ -0.33
COL8A1P27658 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC13□□□□□ -0.33
COL8A1P27658 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC13□□□□□ -0.33
COL8A1P27658 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC13□□□□□ -0.33
COL8A1P27658 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC13□□□□□ -0.33
COL8A1P27658 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC13□□□□□ -0.33
COL8A1P27658 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC13□□□□□ -0.33
COL8A1P27658 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC13□□□□□ -0.33
COL8A1P27658 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC13□□□□□ -0.33
COL8A1P27658 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
COL8A1P27658 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC13□□□□□ -0.33
COL8A1P27658 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC13□□□□□ -0.33
COL8A1P27658 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC13□□□□□ -0.33
COL8A1P27658 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC13□□□□□ -0.33
COL8A1P27658 ZCCHC17-204ENST00000546109 1705 ntTSL 2 BASIC13□□□□□ -0.33
COL8A1P27658 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC13□□□□□ -0.33
COL8A1P27658 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
COL8A1P27658 AGER-201ENST00000375055 1369 ntTSL 1 (best) BASIC13□□□□□ -0.33
COL8A1P27658 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC13□□□□□ -0.33
COL8A1P27658 LINC00334-203ENST00000638500 1377 ntTSL 5 BASIC13□□□□□ -0.33
COL8A1P27658 FRMPD2B-201ENST00000431305 1347 ntBASIC13□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 126.1 ms