Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 GATB-201ENST00000263985 2385 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SDC1P18827 TBC1D17-209ENST00000622860 2370 ntTSL 5 BASIC14.2□□□□□ -0.14
SDC1P18827 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC14.2□□□□□ -0.14
SDC1P18827 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
SDC1P18827 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC14.2□□□□□ -0.14
SDC1P18827 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC14.2□□□□□ -0.14
SDC1P18827 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
SDC1P18827 MRPL37P1-201ENST00000592451 1337 ntBASIC14.2□□□□□ -0.14
SDC1P18827 ZBTB7C-213ENST00000588982 4949 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SDC1P18827 AMIGO2-201ENST00000266581 3763 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SDC1P18827 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SDC1P18827 ABCC10-201ENST00000244533 5088 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
SDC1P18827 GOLGA8VP-201ENST00000559009 1798 ntBASIC14.2□□□□□ -0.14
SDC1P18827 BEND3P1-201ENST00000421591 1944 ntBASIC14.2□□□□□ -0.14
SDC1P18827 OS9-207ENST00000439210 1946 ntTSL 2 BASIC14.2□□□□□ -0.14
SDC1P18827 SLC25A21-AS1-201ENST00000556667 1924 ntBASIC14.2□□□□□ -0.14
SDC1P18827 FOXL1-201ENST00000320241 3655 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
SDC1P18827 IGF2BP2-202ENST00000382199 3688 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
SDC1P18827 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
SDC1P18827 RN7SKP230-201ENST00000365642 335 ntBASIC14.2□□□□□ -0.14
SDC1P18827 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC14.2□□□□□ -0.14
SDC1P18827 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC14.2□□□□□ -0.14
SDC1P18827 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC14.2□□□□□ -0.14
SDC1P18827 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
SDC1P18827 AC093433.1-201ENST00000458048 571 ntBASIC14.2□□□□□ -0.14
SDC1P18827 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
SDC1P18827 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC14.2□□□□□ -0.14
SDC1P18827 CDK4-206ENST00000549606 558 ntTSL 2 BASIC14.2□□□□□ -0.14
SDC1P18827 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SDC1P18827 AC027796.2-201ENST00000575326 344 ntBASIC14.2□□□□□ -0.14
SDC1P18827 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
SDC1P18827 LINC02560-201ENST00000596379 459 ntBASIC14.2□□□□□ -0.14
SDC1P18827 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC14.2□□□□□ -0.14
SDC1P18827 HYOU1-218ENST00000614668 1569 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
SDC1P18827 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
SDC1P18827 TIE1-201ENST00000372476 3882 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SDC1P18827 SRD5A3-201ENST00000264228 4190 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SDC1P18827 AC007240.1-201ENST00000641498 1996 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
SDC1P18827 TTC7A-203ENST00000409245 3033 ntTSL 2 BASIC14.2□□□□□ -0.14
SDC1P18827 SMOC2-201ENST00000354536 3150 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
SDC1P18827 COL6A2-201ENST00000300527 3461 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SDC1P18827 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC14.19□□□□□ -0.14
SDC1P18827 AC011474.4-201ENST00000623523 2076 ntBASIC14.19□□□□□ -0.14
SDC1P18827 STRADA-243ENST00000640086 1925 ntTSL 5 BASIC14.19□□□□□ -0.14
SDC1P18827 RN7SL832P-201ENST00000607781 1756 ntBASIC14.19□□□□□ -0.14
SDC1P18827 ATP13A2-202ENST00000341676 3681 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
SDC1P18827 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC14.19□□□□□ -0.14
SDC1P18827 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SDC1P18827 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
SDC1P18827 WAC-AS1-202ENST00000528337 2608 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
SDC1P18827 SDR42E2-201ENST00000602312 2630 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
SDC1P18827 ACTN2-206ENST00000542672 4906 ntAPPRIS ALT1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SDC1P18827 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SDC1P18827 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SDC1P18827 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
SDC1P18827 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC14.19□□□□□ -0.14
SDC1P18827 ELAC2-201ENST00000338034 3148 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SDC1P18827 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SDC1P18827 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SDC1P18827 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SDC1P18827 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
SDC1P18827 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
SDC1P18827 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC14.19□□□□□ -0.14
SDC1P18827 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC14.19□□□□□ -0.14
SDC1P18827 APOA1-205ENST00000375329 927 ntTSL 2 BASIC14.19□□□□□ -0.14
SDC1P18827 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SDC1P18827 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SDC1P18827 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
SDC1P18827 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC14.19□□□□□ -0.14
SDC1P18827 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
SDC1P18827 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SDC1P18827 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
SDC1P18827 GCOM2-201ENST00000509133 1104 ntBASIC14.19□□□□□ -0.14
SDC1P18827 RN7SL204P-201ENST00000582831 262 ntBASIC14.19□□□□□ -0.14
SDC1P18827 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
SDC1P18827 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC14.19□□□□□ -0.14
SDC1P18827 WASHC2A-202ENST00000314664 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
SDC1P18827 LRRC17-202ENST00000339431 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SDC1P18827 NAALADL1-204ENST00000358658 2699 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SDC1P18827 MARK3-205ENST00000429436 3371 ntAPPRIS ALT1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SDC1P18827 TDRD12-202ENST00000444215 3934 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SDC1P18827 SLC26A8-201ENST00000355574 3463 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
SDC1P18827 SEPT6-204ENST00000360156 2609 ntAPPRIS ALT1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SDC1P18827 B3GNT7-201ENST00000287590 3706 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SDC1P18827 AP000550.1-201ENST00000420508 4833 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
SDC1P18827 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SDC1P18827 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
SDC1P18827 HNRNPH3-201ENST00000265866 2339 ntAPPRIS P4 TSL 1 (best) BASIC14.19□□□□□ -0.14
SDC1P18827 GSN-209ENST00000449733 2702 ntTSL 2 BASIC14.19□□□□□ -0.14
SDC1P18827 PDPK1-201ENST00000268673 4728 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
SDC1P18827 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SDC1P18827 MST1P2-201ENST00000457982 2291 ntBASIC14.18□□□□□ -0.14
SDC1P18827 DUSP18-204ENST00000403268 2920 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
SDC1P18827 MSTO2P-201ENST00000314835 1709 ntBASIC14.18□□□□□ -0.14
SDC1P18827 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SDC1P18827 PIP4K2A-201ENST00000323883 1319 ntTSL 2 BASIC14.18□□□□□ -0.14
SDC1P18827 FUNDC2-201ENST00000369498 6455 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SDC1P18827 TRIM67-201ENST00000366653 3936 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
SDC1P18827 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SDC1P18827 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC14.18□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms