Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC18.79■□□□□ 0.6
NPHP1O15259 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC18.79■□□□□ 0.6
NPHP1O15259 MIR663AHG-201ENST00000427348 1213 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
NPHP1O15259 AL590617.2-201ENST00000432673 917 ntTSL 3 BASIC18.79■□□□□ 0.6
NPHP1O15259 AC005234.1-201ENST00000457851 434 ntTSL 3 BASIC18.79■□□□□ 0.6
NPHP1O15259 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC18.79■□□□□ 0.6
NPHP1O15259 SIRT3-210ENST00000529382 1225 ntTSL 2 BASIC18.79■□□□□ 0.6
NPHP1O15259 NDUFC2-KCTD14-202ENST00000530054 656 ntAPPRIS P3 TSL 2 BASIC18.79■□□□□ 0.6
NPHP1O15259 AL160314.3-201ENST00000556041 767 ntBASIC18.79■□□□□ 0.6
NPHP1O15259 AC015660.1-201ENST00000560103 395 ntTSL 3 BASIC18.79■□□□□ 0.6
NPHP1O15259 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
NPHP1O15259 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
NPHP1O15259 AP001043.1-205ENST00000623098 1033 ntTSL 5 BASIC18.79■□□□□ 0.6
NPHP1O15259 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC18.79■□□□□ 0.6
NPHP1O15259 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
NPHP1O15259 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
NPHP1O15259 GOLGA8S-201ENST00000562295 1878 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
NPHP1O15259 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC18.79■□□□□ 0.6
NPHP1O15259 SNHG1-213ENST00000540725 1374 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
NPHP1O15259 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
NPHP1O15259 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
NPHP1O15259 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
NPHP1O15259 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC18.79■□□□□ 0.6
NPHP1O15259 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC18.78■□□□□ 0.6
NPHP1O15259 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
NPHP1O15259 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
NPHP1O15259 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
NPHP1O15259 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC18.78■□□□□ 0.6
NPHP1O15259 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
NPHP1O15259 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC18.78■□□□□ 0.6
NPHP1O15259 DNASE1L2-204ENST00000567494 1301 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
NPHP1O15259 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
NPHP1O15259 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
NPHP1O15259 KIAA0319-201ENST00000378214 6802 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
NPHP1O15259 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
NPHP1O15259 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
NPHP1O15259 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
NPHP1O15259 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
NPHP1O15259 TRIM25-201ENST00000316881 5734 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
NPHP1O15259 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
NPHP1O15259 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC18.78■□□□□ 0.6
NPHP1O15259 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
NPHP1O15259 PEX13-203ENST00000414712 1014 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
NPHP1O15259 LINC01006-202ENST00000418309 640 ntTSL 3 BASIC18.78■□□□□ 0.6
NPHP1O15259 AC060234.1-201ENST00000422966 474 ntTSL 3 BASIC18.78■□□□□ 0.6
NPHP1O15259 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC18.78■□□□□ 0.6
NPHP1O15259 NOC2LP1-201ENST00000450578 752 ntBASIC18.78■□□□□ 0.6
NPHP1O15259 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC18.78■□□□□ 0.6
NPHP1O15259 COX6A1P2-201ENST00000620597 330 ntBASIC18.78■□□□□ 0.6
NPHP1O15259 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC18.78■□□□□ 0.6
NPHP1O15259 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC18.78■□□□□ 0.6
NPHP1O15259 RAB18-207ENST00000535776 4811 ntTSL 2 BASIC18.78■□□□□ 0.6
NPHP1O15259 SHOX-202ENST00000381575 1351 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
NPHP1O15259 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC18.78■□□□□ 0.6
NPHP1O15259 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC18.78■□□□□ 0.6
NPHP1O15259 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC18.77■□□□□ 0.6
NPHP1O15259 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC18.77■□□□□ 0.6
NPHP1O15259 AC105917.1-201ENST00000506637 2539 ntBASIC18.77■□□□□ 0.6
NPHP1O15259 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC18.77■□□□□ 0.6
NPHP1O15259 TMEM106A-202ENST00000541594 1330 ntTSL 2 BASIC18.77■□□□□ 0.6
NPHP1O15259 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
NPHP1O15259 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
NPHP1O15259 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
NPHP1O15259 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
NPHP1O15259 AMT-239ENST00000636865 1914 ntTSL 5 BASIC18.77■□□□□ 0.6
NPHP1O15259 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC18.77■□□□□ 0.6
NPHP1O15259 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
NPHP1O15259 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC18.77■□□□□ 0.6
NPHP1O15259 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
NPHP1O15259 PDIA3P2-201ENST00000428073 158 ntBASIC18.77■□□□□ 0.6
NPHP1O15259 AC012441.2-201ENST00000444843 739 ntBASIC18.77■□□□□ 0.6
NPHP1O15259 AC019193.1-201ENST00000506678 823 ntBASIC18.77■□□□□ 0.6
NPHP1O15259 SMIM23-202ENST00000523047 573 ntAPPRIS P5 TSL 2 BASIC18.77■□□□□ 0.6
NPHP1O15259 AC103988.2-201ENST00000561804 725 ntBASIC18.77■□□□□ 0.6
NPHP1O15259 SNORD3B-2-202ENST00000571722 791 ntBASIC18.77■□□□□ 0.6
NPHP1O15259 PYY-202ENST00000592796 580 ntAPPRIS ALT1 TSL 1 (best) BASIC18.77■□□□□ 0.6
NPHP1O15259 AL132994.2-201ENST00000603120 687 ntBASIC18.77■□□□□ 0.6
NPHP1O15259 AC138696.2-201ENST00000607376 223 ntBASIC18.77■□□□□ 0.6
NPHP1O15259 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
NPHP1O15259 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
NPHP1O15259 GPR83-201ENST00000243673 4282 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
NPHP1O15259 AGPAT3-205ENST00000398063 5767 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
NPHP1O15259 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
NPHP1O15259 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
NPHP1O15259 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC18.77■□□□□ 0.6
NPHP1O15259 AWAT1-201ENST00000374521 1365 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
NPHP1O15259 PLAG1-203ENST00000429357 1899 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
NPHP1O15259 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC18.77■□□□□ 0.6
NPHP1O15259 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
NPHP1O15259 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC18.77■□□□□ 0.59
NPHP1O15259 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.59
NPHP1O15259 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC18.77■□□□□ 0.59
NPHP1O15259 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC18.77■□□□□ 0.59
NPHP1O15259 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
NPHP1O15259 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
NPHP1O15259 INTS1-201ENST00000404767 6959 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.59
NPHP1O15259 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
NPHP1O15259 AL008718.2-201ENST00000609206 1313 ntBASIC18.76■□□□□ 0.59
NPHP1O15259 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC18.76■□□□□ 0.59
NPHP1O15259 MYL6-219ENST00000551589 1438 ntAPPRIS ALT1 TSL 2 BASIC18.76■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms