Protein–RNA interactions for Protein: S4R434

TMEM56-RWDD3, TMEM56-RWDD3 readthrough, humanhuman

Predictions only

Length 201 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM56-RWDD3S4R434 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
TMEM56-RWDD3S4R434 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
TMEM56-RWDD3S4R434 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC18.73■□□□□ 0.59
TMEM56-RWDD3S4R434 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
TMEM56-RWDD3S4R434 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC18.72■□□□□ 0.59
TMEM56-RWDD3S4R434 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
TMEM56-RWDD3S4R434 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
TMEM56-RWDD3S4R434 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
TMEM56-RWDD3S4R434 ABHD17AP4-201ENST00000411545 909 ntBASIC18.72■□□□□ 0.59
TMEM56-RWDD3S4R434 RAP2CP1-202ENST00000605179 643 ntBASIC18.72■□□□□ 0.59
TMEM56-RWDD3S4R434 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
TMEM56-RWDD3S4R434 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC18.72■□□□□ 0.59
TMEM56-RWDD3S4R434 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
TMEM56-RWDD3S4R434 CD37-213ENST00000598095 1598 ntTSL 2 BASIC18.72■□□□□ 0.59
TMEM56-RWDD3S4R434 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
TMEM56-RWDD3S4R434 LINC00526-201ENST00000581067 1875 ntBASIC18.71■□□□□ 0.59
TMEM56-RWDD3S4R434 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
TMEM56-RWDD3S4R434 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
TMEM56-RWDD3S4R434 AC007029.1-201ENST00000604183 313 ntBASIC18.71■□□□□ 0.59
TMEM56-RWDD3S4R434 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
TMEM56-RWDD3S4R434 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
TMEM56-RWDD3S4R434 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
TMEM56-RWDD3S4R434 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
TMEM56-RWDD3S4R434 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
TMEM56-RWDD3S4R434 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
TMEM56-RWDD3S4R434 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
TMEM56-RWDD3S4R434 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
TMEM56-RWDD3S4R434 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
TMEM56-RWDD3S4R434 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
TMEM56-RWDD3S4R434 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
TMEM56-RWDD3S4R434 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
TMEM56-RWDD3S4R434 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
TMEM56-RWDD3S4R434 GUSBP5-202ENST00000510805 1989 ntBASIC18.7■□□□□ 0.58
TMEM56-RWDD3S4R434 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
TMEM56-RWDD3S4R434 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
TMEM56-RWDD3S4R434 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
TMEM56-RWDD3S4R434 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
TMEM56-RWDD3S4R434 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC18.69■□□□□ 0.58
TMEM56-RWDD3S4R434 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC18.69■□□□□ 0.58
TMEM56-RWDD3S4R434 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC18.69■□□□□ 0.58
TMEM56-RWDD3S4R434 AC127496.7-201ENST00000625110 1798 ntBASIC18.69■□□□□ 0.58
TMEM56-RWDD3S4R434 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
TMEM56-RWDD3S4R434 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
TMEM56-RWDD3S4R434 AC026202.3-201ENST00000600805 1127 ntBASIC18.69■□□□□ 0.58
TMEM56-RWDD3S4R434 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC18.69■□□□□ 0.58
TMEM56-RWDD3S4R434 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC18.69■□□□□ 0.58
TMEM56-RWDD3S4R434 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC18.68■□□□□ 0.58
TMEM56-RWDD3S4R434 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC18.68■□□□□ 0.58
TMEM56-RWDD3S4R434 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TMEM56-RWDD3S4R434 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TMEM56-RWDD3S4R434 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
TMEM56-RWDD3S4R434 TPT1-202ENST00000379055 948 ntTSL 2 BASIC18.68■□□□□ 0.58
TMEM56-RWDD3S4R434 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC18.68■□□□□ 0.58
TMEM56-RWDD3S4R434 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TMEM56-RWDD3S4R434 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TMEM56-RWDD3S4R434 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
TMEM56-RWDD3S4R434 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
TMEM56-RWDD3S4R434 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC18.67■□□□□ 0.58
TMEM56-RWDD3S4R434 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TMEM56-RWDD3S4R434 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
TMEM56-RWDD3S4R434 ECEL1P1-201ENST00000373592 1742 ntBASIC18.67■□□□□ 0.58
TMEM56-RWDD3S4R434 AC090877.2-201ENST00000558441 1738 ntBASIC18.67■□□□□ 0.58
TMEM56-RWDD3S4R434 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
TMEM56-RWDD3S4R434 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TMEM56-RWDD3S4R434 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
TMEM56-RWDD3S4R434 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
TMEM56-RWDD3S4R434 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
TMEM56-RWDD3S4R434 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
TMEM56-RWDD3S4R434 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TMEM56-RWDD3S4R434 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TMEM56-RWDD3S4R434 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TMEM56-RWDD3S4R434 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TMEM56-RWDD3S4R434 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TMEM56-RWDD3S4R434 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC18.66■□□□□ 0.58
TMEM56-RWDD3S4R434 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TMEM56-RWDD3S4R434 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC18.66■□□□□ 0.58
TMEM56-RWDD3S4R434 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC18.66■□□□□ 0.58
TMEM56-RWDD3S4R434 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
TMEM56-RWDD3S4R434 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC18.66■□□□□ 0.58
TMEM56-RWDD3S4R434 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TMEM56-RWDD3S4R434 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC18.66■□□□□ 0.58
TMEM56-RWDD3S4R434 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TMEM56-RWDD3S4R434 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
TMEM56-RWDD3S4R434 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC18.66■□□□□ 0.58
TMEM56-RWDD3S4R434 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC18.65■□□□□ 0.58
TMEM56-RWDD3S4R434 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
TMEM56-RWDD3S4R434 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TMEM56-RWDD3S4R434 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC18.65■□□□□ 0.58
TMEM56-RWDD3S4R434 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC18.65■□□□□ 0.58
TMEM56-RWDD3S4R434 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TMEM56-RWDD3S4R434 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
TMEM56-RWDD3S4R434 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TMEM56-RWDD3S4R434 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
TMEM56-RWDD3S4R434 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TMEM56-RWDD3S4R434 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
TMEM56-RWDD3S4R434 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC18.64■□□□□ 0.58
TMEM56-RWDD3S4R434 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.58
TMEM56-RWDD3S4R434 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC18.64■□□□□ 0.58
TMEM56-RWDD3S4R434 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TMEM56-RWDD3S4R434 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms