Protein–RNA interactions for Protein: Q9P244

LRFN1, Leucine-rich repeat and fibronectin type III domain-containing protein 1, humanhuman

Predictions only

Length 771 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN1Q9P244 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC21.02■□□□□ 0.95
LRFN1Q9P244 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
LRFN1Q9P244 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC21.01■□□□□ 0.95
LRFN1Q9P244 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
LRFN1Q9P244 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
LRFN1Q9P244 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
LRFN1Q9P244 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
LRFN1Q9P244 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
LRFN1Q9P244 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC21.01■□□□□ 0.95
LRFN1Q9P244 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
LRFN1Q9P244 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
LRFN1Q9P244 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC21.01■□□□□ 0.95
LRFN1Q9P244 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC21.01■□□□□ 0.95
LRFN1Q9P244 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
LRFN1Q9P244 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
LRFN1Q9P244 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC21■□□□□ 0.95
LRFN1Q9P244 MIR935-201ENST00000401179 91 ntBASIC21■□□□□ 0.95
LRFN1Q9P244 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC21■□□□□ 0.95
LRFN1Q9P244 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC21■□□□□ 0.95
LRFN1Q9P244 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC21■□□□□ 0.95
LRFN1Q9P244 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
LRFN1Q9P244 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
LRFN1Q9P244 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
LRFN1Q9P244 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC20.99■□□□□ 0.95
LRFN1Q9P244 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
LRFN1Q9P244 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC20.99■□□□□ 0.95
LRFN1Q9P244 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
LRFN1Q9P244 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
LRFN1Q9P244 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
LRFN1Q9P244 GATM-206ENST00000558336 1522 ntTSL 2 BASIC20.99■□□□□ 0.95
LRFN1Q9P244 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
LRFN1Q9P244 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
LRFN1Q9P244 AL161729.1-201ENST00000604104 1402 ntBASIC20.98■□□□□ 0.95
LRFN1Q9P244 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC20.98■□□□□ 0.95
LRFN1Q9P244 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC20.98■□□□□ 0.95
LRFN1Q9P244 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC20.98■□□□□ 0.95
LRFN1Q9P244 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
LRFN1Q9P244 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
LRFN1Q9P244 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC20.98■□□□□ 0.95
LRFN1Q9P244 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
LRFN1Q9P244 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
LRFN1Q9P244 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC20.97■□□□□ 0.95
LRFN1Q9P244 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
LRFN1Q9P244 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
LRFN1Q9P244 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
LRFN1Q9P244 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
LRFN1Q9P244 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
LRFN1Q9P244 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
LRFN1Q9P244 CD37-213ENST00000598095 1598 ntTSL 2 BASIC20.97■□□□□ 0.95
LRFN1Q9P244 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
LRFN1Q9P244 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC20.96■□□□□ 0.95
LRFN1Q9P244 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC20.96■□□□□ 0.95
LRFN1Q9P244 AP003733.4-201ENST00000623785 1697 ntBASIC20.96■□□□□ 0.95
LRFN1Q9P244 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC20.96■□□□□ 0.95
LRFN1Q9P244 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
LRFN1Q9P244 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
LRFN1Q9P244 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
LRFN1Q9P244 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC20.96■□□□□ 0.95
LRFN1Q9P244 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
LRFN1Q9P244 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC20.96■□□□□ 0.95
LRFN1Q9P244 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
LRFN1Q9P244 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC20.96■□□□□ 0.95
LRFN1Q9P244 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
LRFN1Q9P244 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC20.96■□□□□ 0.95
LRFN1Q9P244 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.95
LRFN1Q9P244 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
LRFN1Q9P244 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
LRFN1Q9P244 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC20.95■□□□□ 0.94
LRFN1Q9P244 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
LRFN1Q9P244 UNC93B3-201ENST00000308076 687 ntBASIC20.95■□□□□ 0.94
LRFN1Q9P244 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
LRFN1Q9P244 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC20.95■□□□□ 0.94
LRFN1Q9P244 PBX2P1-201ENST00000493219 1291 ntBASIC20.95■□□□□ 0.94
LRFN1Q9P244 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
LRFN1Q9P244 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
LRFN1Q9P244 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC20.95■□□□□ 0.94
LRFN1Q9P244 AC005837.3-201ENST00000612163 286 ntBASIC20.95■□□□□ 0.94
LRFN1Q9P244 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC20.95■□□□□ 0.94
LRFN1Q9P244 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
LRFN1Q9P244 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
LRFN1Q9P244 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC20.94■□□□□ 0.94
LRFN1Q9P244 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC20.94■□□□□ 0.94
LRFN1Q9P244 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
LRFN1Q9P244 AC133561.4-201ENST00000566112 224 ntBASIC20.94■□□□□ 0.94
LRFN1Q9P244 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
LRFN1Q9P244 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC20.94■□□□□ 0.94
LRFN1Q9P244 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
LRFN1Q9P244 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
LRFN1Q9P244 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC20.93■□□□□ 0.94
LRFN1Q9P244 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
LRFN1Q9P244 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
LRFN1Q9P244 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
LRFN1Q9P244 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
LRFN1Q9P244 AC106739.1-201ENST00000617035 715 ntBASIC20.93■□□□□ 0.94
LRFN1Q9P244 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
LRFN1Q9P244 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC20.93■□□□□ 0.94
LRFN1Q9P244 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
LRFN1Q9P244 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
LRFN1Q9P244 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
LRFN1Q9P244 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC20.92■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms