Protein–RNA interactions for Protein: Q9H9A6

LRRC40, Leucine-rich repeat-containing protein 40, humanhuman

Predictions only

Length 602 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC40Q9H9A6 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC23.23■■□□□ 1.31
LRRC40Q9H9A6 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
LRRC40Q9H9A6 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC23.23■■□□□ 1.31
LRRC40Q9H9A6 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC23.23■■□□□ 1.31
LRRC40Q9H9A6 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
LRRC40Q9H9A6 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
LRRC40Q9H9A6 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC23.23■■□□□ 1.31
LRRC40Q9H9A6 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
LRRC40Q9H9A6 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
LRRC40Q9H9A6 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
LRRC40Q9H9A6 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC23.23■■□□□ 1.31
LRRC40Q9H9A6 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC23.22■■□□□ 1.31
LRRC40Q9H9A6 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
LRRC40Q9H9A6 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC23.22■■□□□ 1.31
LRRC40Q9H9A6 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
LRRC40Q9H9A6 KRT8P33-201ENST00000508125 1423 ntBASIC23.22■■□□□ 1.31
LRRC40Q9H9A6 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
LRRC40Q9H9A6 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
LRRC40Q9H9A6 EI24-213ENST00000618552 1747 ntTSL 5 BASIC23.22■■□□□ 1.31
LRRC40Q9H9A6 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
LRRC40Q9H9A6 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC23.21■■□□□ 1.31
LRRC40Q9H9A6 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC23.21■■□□□ 1.31
LRRC40Q9H9A6 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
LRRC40Q9H9A6 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
LRRC40Q9H9A6 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC23.21■■□□□ 1.31
LRRC40Q9H9A6 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC23.21■■□□□ 1.31
LRRC40Q9H9A6 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC23.21■■□□□ 1.31
LRRC40Q9H9A6 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC23.21■■□□□ 1.31
LRRC40Q9H9A6 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
LRRC40Q9H9A6 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
LRRC40Q9H9A6 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
LRRC40Q9H9A6 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC23.2■■□□□ 1.3
LRRC40Q9H9A6 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC23.2■■□□□ 1.3
LRRC40Q9H9A6 DUSP8P5-201ENST00000422884 1815 ntBASIC23.2■■□□□ 1.3
LRRC40Q9H9A6 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
LRRC40Q9H9A6 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC23.2■■□□□ 1.3
LRRC40Q9H9A6 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC23.2■■□□□ 1.3
LRRC40Q9H9A6 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC23.2■■□□□ 1.3
LRRC40Q9H9A6 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
LRRC40Q9H9A6 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC23.2■■□□□ 1.3
LRRC40Q9H9A6 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
LRRC40Q9H9A6 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
LRRC40Q9H9A6 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC23.19■■□□□ 1.3
LRRC40Q9H9A6 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC23.19■■□□□ 1.3
LRRC40Q9H9A6 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC23.19■■□□□ 1.3
LRRC40Q9H9A6 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC23.19■■□□□ 1.3
LRRC40Q9H9A6 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC23.19■■□□□ 1.3
LRRC40Q9H9A6 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC23.19■■□□□ 1.3
LRRC40Q9H9A6 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
LRRC40Q9H9A6 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC23.18■■□□□ 1.3
LRRC40Q9H9A6 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC23.18■■□□□ 1.3
LRRC40Q9H9A6 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
LRRC40Q9H9A6 AC103724.3-201ENST00000564481 992 ntBASIC23.18■■□□□ 1.3
LRRC40Q9H9A6 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
LRRC40Q9H9A6 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC23.18■■□□□ 1.3
LRRC40Q9H9A6 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC23.18■■□□□ 1.3
LRRC40Q9H9A6 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC23.18■■□□□ 1.3
LRRC40Q9H9A6 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC23.17■■□□□ 1.3
LRRC40Q9H9A6 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
LRRC40Q9H9A6 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
LRRC40Q9H9A6 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC23.17■■□□□ 1.3
LRRC40Q9H9A6 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
LRRC40Q9H9A6 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
LRRC40Q9H9A6 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
LRRC40Q9H9A6 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC23.17■■□□□ 1.3
LRRC40Q9H9A6 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
LRRC40Q9H9A6 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC23.17■■□□□ 1.3
LRRC40Q9H9A6 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
LRRC40Q9H9A6 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC23.16■■□□□ 1.3
LRRC40Q9H9A6 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
LRRC40Q9H9A6 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
LRRC40Q9H9A6 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC23.16■■□□□ 1.3
LRRC40Q9H9A6 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
LRRC40Q9H9A6 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
LRRC40Q9H9A6 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC23.16■■□□□ 1.3
LRRC40Q9H9A6 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC23.16■■□□□ 1.3
LRRC40Q9H9A6 ALDH1A3-203ENST00000557963 1670 ntBASIC23.16■■□□□ 1.3
LRRC40Q9H9A6 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
LRRC40Q9H9A6 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
LRRC40Q9H9A6 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC23.15■■□□□ 1.3
LRRC40Q9H9A6 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC23.15■■□□□ 1.3
LRRC40Q9H9A6 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
LRRC40Q9H9A6 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC23.15■■□□□ 1.3
LRRC40Q9H9A6 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC23.15■■□□□ 1.3
LRRC40Q9H9A6 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC23.15■■□□□ 1.3
LRRC40Q9H9A6 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC23.14■■□□□ 1.3
LRRC40Q9H9A6 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC23.14■■□□□ 1.29
LRRC40Q9H9A6 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC23.14■■□□□ 1.29
LRRC40Q9H9A6 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
LRRC40Q9H9A6 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC23.14■■□□□ 1.29
LRRC40Q9H9A6 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
LRRC40Q9H9A6 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC23.14■■□□□ 1.29
LRRC40Q9H9A6 EI24-204ENST00000527235 1625 ntTSL 5 BASIC23.14■■□□□ 1.29
LRRC40Q9H9A6 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC23.14■■□□□ 1.29
LRRC40Q9H9A6 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
LRRC40Q9H9A6 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC23.14■■□□□ 1.29
LRRC40Q9H9A6 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC23.14■■□□□ 1.29
LRRC40Q9H9A6 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
LRRC40Q9H9A6 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
LRRC40Q9H9A6 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC23.13■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms