Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
LIME1Q9H400 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
LIME1Q9H400 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC20.09■□□□□ 0.81
LIME1Q9H400 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC20.09■□□□□ 0.81
LIME1Q9H400 AC024257.2-201ENST00000549699 147 ntBASIC20.09■□□□□ 0.81
LIME1Q9H400 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
LIME1Q9H400 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
LIME1Q9H400 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.81
LIME1Q9H400 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC20.08■□□□□ 0.81
LIME1Q9H400 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
LIME1Q9H400 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
LIME1Q9H400 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC20.08■□□□□ 0.81
LIME1Q9H400 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
LIME1Q9H400 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
LIME1Q9H400 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
LIME1Q9H400 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
LIME1Q9H400 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC20.08■□□□□ 0.81
LIME1Q9H400 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
LIME1Q9H400 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.8
LIME1Q9H400 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.8
LIME1Q9H400 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC20.07■□□□□ 0.8
LIME1Q9H400 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC20.07■□□□□ 0.8
LIME1Q9H400 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC20.07■□□□□ 0.8
LIME1Q9H400 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC20.07■□□□□ 0.8
LIME1Q9H400 SSSCA1-AS1-201ENST00000567594 614 ntBASIC20.07■□□□□ 0.8
LIME1Q9H400 SNX5-217ENST00000606557 1087 ntBASIC20.07■□□□□ 0.8
LIME1Q9H400 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC20.07■□□□□ 0.8
LIME1Q9H400 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC20.07■□□□□ 0.8
LIME1Q9H400 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
LIME1Q9H400 TMEM202-AS1-202ENST00000565181 2325 ntBASIC20.07■□□□□ 0.8
LIME1Q9H400 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
LIME1Q9H400 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
LIME1Q9H400 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC20.06■□□□□ 0.8
LIME1Q9H400 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
LIME1Q9H400 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
LIME1Q9H400 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
LIME1Q9H400 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
LIME1Q9H400 AC105265.2-201ENST00000467189 838 ntBASIC20.06■□□□□ 0.8
LIME1Q9H400 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC20.06■□□□□ 0.8
LIME1Q9H400 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
LIME1Q9H400 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
LIME1Q9H400 LTK-203ENST00000453182 2412 ntTSL 2 BASIC20.05■□□□□ 0.8
LIME1Q9H400 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
LIME1Q9H400 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
LIME1Q9H400 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
LIME1Q9H400 AL355001.2-201ENST00000620617 1191 ntBASIC20.05■□□□□ 0.8
LIME1Q9H400 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
LIME1Q9H400 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
LIME1Q9H400 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
LIME1Q9H400 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC20.04■□□□□ 0.8
LIME1Q9H400 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
LIME1Q9H400 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC20.04■□□□□ 0.8
LIME1Q9H400 EDA-201ENST00000338901 1233 ntBASIC20.04■□□□□ 0.8
LIME1Q9H400 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LIME1Q9H400 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
LIME1Q9H400 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
LIME1Q9H400 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC20.04■□□□□ 0.8
LIME1Q9H400 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
LIME1Q9H400 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
LIME1Q9H400 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC20.03■□□□□ 0.8
LIME1Q9H400 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LIME1Q9H400 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LIME1Q9H400 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LIME1Q9H400 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC20.03■□□□□ 0.8
LIME1Q9H400 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC20.03■□□□□ 0.8
LIME1Q9H400 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC20.03■□□□□ 0.8
LIME1Q9H400 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC20.02■□□□□ 0.8
LIME1Q9H400 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
LIME1Q9H400 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
LIME1Q9H400 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC20.02■□□□□ 0.8
LIME1Q9H400 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
LIME1Q9H400 SRD5A1P1-201ENST00000442297 786 ntBASIC20.02■□□□□ 0.8
LIME1Q9H400 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC20.02■□□□□ 0.8
LIME1Q9H400 STOX2-205ENST00000513034 807 ntTSL 3 BASIC20.02■□□□□ 0.8
LIME1Q9H400 MIR6722-201ENST00000617286 78 ntBASIC20.02■□□□□ 0.8
LIME1Q9H400 AL136967.2-201ENST00000623968 743 ntBASIC20.02■□□□□ 0.8
LIME1Q9H400 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
LIME1Q9H400 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC20.02■□□□□ 0.8
LIME1Q9H400 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC20.02■□□□□ 0.8
LIME1Q9H400 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC20.02■□□□□ 0.79
LIME1Q9H400 FOXO3B-201ENST00000395675 1928 ntBASIC20.02■□□□□ 0.79
LIME1Q9H400 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.79
LIME1Q9H400 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC20.02■□□□□ 0.79
LIME1Q9H400 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC20.01■□□□□ 0.79
LIME1Q9H400 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
LIME1Q9H400 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
LIME1Q9H400 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
LIME1Q9H400 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC20.01■□□□□ 0.79
LIME1Q9H400 ANKRD20A6P-201ENST00000618763 204 ntBASIC20.01■□□□□ 0.79
LIME1Q9H400 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC20.01■□□□□ 0.79
LIME1Q9H400 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC20.01■□□□□ 0.79
LIME1Q9H400 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
LIME1Q9H400 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
LIME1Q9H400 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC20■□□□□ 0.79
LIME1Q9H400 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC20■□□□□ 0.79
LIME1Q9H400 AF213884.3-201ENST00000563833 479 ntBASIC20■□□□□ 0.79
LIME1Q9H400 GRAMD4P4-201ENST00000613563 1115 ntBASIC20■□□□□ 0.79
LIME1Q9H400 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC20■□□□□ 0.79
LIME1Q9H400 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC20■□□□□ 0.79
LIME1Q9H400 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms