Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC21.9■■□□□ 1.1
CLHC1Q8NHS4 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
CLHC1Q8NHS4 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC21.9■■□□□ 1.1
CLHC1Q8NHS4 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC21.9■■□□□ 1.1
CLHC1Q8NHS4 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
CLHC1Q8NHS4 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC21.9■■□□□ 1.1
CLHC1Q8NHS4 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
CLHC1Q8NHS4 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
CLHC1Q8NHS4 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC21.89■■□□□ 1.09
CLHC1Q8NHS4 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC21.89■■□□□ 1.09
CLHC1Q8NHS4 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC21.89■■□□□ 1.09
CLHC1Q8NHS4 CD37-213ENST00000598095 1598 ntTSL 2 BASIC21.89■■□□□ 1.09
CLHC1Q8NHS4 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.09
CLHC1Q8NHS4 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC21.89■■□□□ 1.09
CLHC1Q8NHS4 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC21.89■■□□□ 1.09
CLHC1Q8NHS4 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC21.88■■□□□ 1.09
CLHC1Q8NHS4 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC21.88■■□□□ 1.09
CLHC1Q8NHS4 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC21.88■■□□□ 1.09
CLHC1Q8NHS4 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC21.88■■□□□ 1.09
CLHC1Q8NHS4 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC21.88■■□□□ 1.09
CLHC1Q8NHS4 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC21.88■■□□□ 1.09
CLHC1Q8NHS4 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
CLHC1Q8NHS4 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC21.88■■□□□ 1.09
CLHC1Q8NHS4 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
CLHC1Q8NHS4 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
CLHC1Q8NHS4 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC21.88■■□□□ 1.09
CLHC1Q8NHS4 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
CLHC1Q8NHS4 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
CLHC1Q8NHS4 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
CLHC1Q8NHS4 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
CLHC1Q8NHS4 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
CLHC1Q8NHS4 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC21.87■■□□□ 1.09
CLHC1Q8NHS4 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
CLHC1Q8NHS4 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
CLHC1Q8NHS4 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
CLHC1Q8NHS4 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
CLHC1Q8NHS4 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
CLHC1Q8NHS4 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC21.87■■□□□ 1.09
CLHC1Q8NHS4 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
CLHC1Q8NHS4 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC21.87■■□□□ 1.09
CLHC1Q8NHS4 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC21.87■■□□□ 1.09
CLHC1Q8NHS4 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC21.87■■□□□ 1.09
CLHC1Q8NHS4 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
CLHC1Q8NHS4 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
CLHC1Q8NHS4 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
CLHC1Q8NHS4 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC21.87■■□□□ 1.09
CLHC1Q8NHS4 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC21.87■■□□□ 1.09
CLHC1Q8NHS4 EI24-213ENST00000618552 1747 ntTSL 5 BASIC21.86■■□□□ 1.09
CLHC1Q8NHS4 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
CLHC1Q8NHS4 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
CLHC1Q8NHS4 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
CLHC1Q8NHS4 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC21.86■■□□□ 1.09
CLHC1Q8NHS4 BHLHE23-202ENST00000612929 1109 ntBASIC21.86■■□□□ 1.09
CLHC1Q8NHS4 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
CLHC1Q8NHS4 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
CLHC1Q8NHS4 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC21.86■■□□□ 1.09
CLHC1Q8NHS4 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
CLHC1Q8NHS4 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC21.86■■□□□ 1.09
CLHC1Q8NHS4 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC21.86■■□□□ 1.09
CLHC1Q8NHS4 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
CLHC1Q8NHS4 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC21.85■■□□□ 1.09
CLHC1Q8NHS4 AC012676.1-201ENST00000574705 1949 ntBASIC21.85■■□□□ 1.09
CLHC1Q8NHS4 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
CLHC1Q8NHS4 AC004987.1-201ENST00000428627 508 ntBASIC21.85■■□□□ 1.09
CLHC1Q8NHS4 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC21.85■■□□□ 1.09
CLHC1Q8NHS4 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
CLHC1Q8NHS4 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC21.85■■□□□ 1.09
CLHC1Q8NHS4 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
CLHC1Q8NHS4 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC21.85■■□□□ 1.09
CLHC1Q8NHS4 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC21.84■■□□□ 1.09
CLHC1Q8NHS4 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC21.84■■□□□ 1.09
CLHC1Q8NHS4 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
CLHC1Q8NHS4 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC21.84■■□□□ 1.09
CLHC1Q8NHS4 ATP5G2P3-201ENST00000429083 425 ntBASIC21.84■■□□□ 1.09
CLHC1Q8NHS4 AC011551.1-201ENST00000614101 683 ntBASIC21.84■■□□□ 1.09
CLHC1Q8NHS4 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC21.83■■□□□ 1.09
CLHC1Q8NHS4 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC21.83■■□□□ 1.09
CLHC1Q8NHS4 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC21.83■■□□□ 1.09
CLHC1Q8NHS4 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC21.83■■□□□ 1.09
CLHC1Q8NHS4 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
CLHC1Q8NHS4 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC21.83■■□□□ 1.09
CLHC1Q8NHS4 AL022069.1-201ENST00000568025 1636 ntBASIC21.83■■□□□ 1.08
CLHC1Q8NHS4 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
CLHC1Q8NHS4 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
CLHC1Q8NHS4 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
CLHC1Q8NHS4 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CLHC1Q8NHS4 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC21.82■■□□□ 1.08
CLHC1Q8NHS4 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CLHC1Q8NHS4 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
CLHC1Q8NHS4 GAK-223ENST00000628912 497 ntTSL 5 BASIC21.82■■□□□ 1.08
CLHC1Q8NHS4 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CLHC1Q8NHS4 ANOS2P-203ENST00000472227 1816 ntBASIC21.82■■□□□ 1.08
CLHC1Q8NHS4 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC21.82■■□□□ 1.08
CLHC1Q8NHS4 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC21.81■■□□□ 1.08
CLHC1Q8NHS4 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC21.81■■□□□ 1.08
CLHC1Q8NHS4 AC131274.2-201ENST00000580697 1507 ntBASIC21.81■■□□□ 1.08
CLHC1Q8NHS4 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
CLHC1Q8NHS4 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC21.81■■□□□ 1.08
CLHC1Q8NHS4 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC21.81■■□□□ 1.08
CLHC1Q8NHS4 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 40.9 ms