Protein–RNA interactions for Protein: Q8IYX3

CCDC116, Coiled-coil domain-containing protein 116, humanhuman

Predictions only

Length 515 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC116Q8IYX3 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC21.54■■□□□ 1.04
CCDC116Q8IYX3 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
CCDC116Q8IYX3 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CCDC116Q8IYX3 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CCDC116Q8IYX3 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
CCDC116Q8IYX3 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC21.53■■□□□ 1.04
CCDC116Q8IYX3 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC21.53■■□□□ 1.04
CCDC116Q8IYX3 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
CCDC116Q8IYX3 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC21.53■■□□□ 1.04
CCDC116Q8IYX3 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CCDC116Q8IYX3 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC21.52■■□□□ 1.04
CCDC116Q8IYX3 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC21.52■■□□□ 1.04
CCDC116Q8IYX3 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC21.52■■□□□ 1.04
CCDC116Q8IYX3 PRTG-204ENST00000561292 833 ntTSL 3 BASIC21.52■■□□□ 1.04
CCDC116Q8IYX3 AC137630.3-201ENST00000607245 391 ntBASIC21.52■■□□□ 1.04
CCDC116Q8IYX3 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC21.52■■□□□ 1.04
CCDC116Q8IYX3 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CCDC116Q8IYX3 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC21.52■■□□□ 1.03
CCDC116Q8IYX3 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CCDC116Q8IYX3 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
CCDC116Q8IYX3 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC21.51■■□□□ 1.03
CCDC116Q8IYX3 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC21.51■■□□□ 1.03
CCDC116Q8IYX3 EI24-213ENST00000618552 1747 ntTSL 5 BASIC21.51■■□□□ 1.03
CCDC116Q8IYX3 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC21.51■■□□□ 1.03
CCDC116Q8IYX3 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC21.51■■□□□ 1.03
CCDC116Q8IYX3 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC21.51■■□□□ 1.03
CCDC116Q8IYX3 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC21.51■■□□□ 1.03
CCDC116Q8IYX3 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CCDC116Q8IYX3 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CCDC116Q8IYX3 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CCDC116Q8IYX3 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC21.5■■□□□ 1.03
CCDC116Q8IYX3 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC21.5■■□□□ 1.03
CCDC116Q8IYX3 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CCDC116Q8IYX3 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CCDC116Q8IYX3 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CCDC116Q8IYX3 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC21.5■■□□□ 1.03
CCDC116Q8IYX3 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
CCDC116Q8IYX3 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
CCDC116Q8IYX3 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CCDC116Q8IYX3 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC21.5■■□□□ 1.03
CCDC116Q8IYX3 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CCDC116Q8IYX3 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC21.49■■□□□ 1.03
CCDC116Q8IYX3 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CCDC116Q8IYX3 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC21.49■■□□□ 1.03
CCDC116Q8IYX3 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CCDC116Q8IYX3 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CCDC116Q8IYX3 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC21.49■■□□□ 1.03
CCDC116Q8IYX3 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CCDC116Q8IYX3 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CCDC116Q8IYX3 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
CCDC116Q8IYX3 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
CCDC116Q8IYX3 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CCDC116Q8IYX3 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CCDC116Q8IYX3 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC21.48■■□□□ 1.03
CCDC116Q8IYX3 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CCDC116Q8IYX3 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
CCDC116Q8IYX3 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
CCDC116Q8IYX3 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
CCDC116Q8IYX3 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC21.48■■□□□ 1.03
CCDC116Q8IYX3 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC21.48■■□□□ 1.03
CCDC116Q8IYX3 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC21.48■■□□□ 1.03
CCDC116Q8IYX3 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CCDC116Q8IYX3 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC21.47■■□□□ 1.03
CCDC116Q8IYX3 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
CCDC116Q8IYX3 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CCDC116Q8IYX3 TK2-202ENST00000417693 1046 ntTSL 2 BASIC21.47■■□□□ 1.03
CCDC116Q8IYX3 AC004448.1-201ENST00000458332 883 ntBASIC21.47■■□□□ 1.03
CCDC116Q8IYX3 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
CCDC116Q8IYX3 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC21.47■■□□□ 1.03
CCDC116Q8IYX3 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC21.47■■□□□ 1.03
CCDC116Q8IYX3 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
CCDC116Q8IYX3 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CCDC116Q8IYX3 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
CCDC116Q8IYX3 RNF146-205ENST00000477776 762 ntTSL 3 BASIC21.46■■□□□ 1.03
CCDC116Q8IYX3 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC21.46■■□□□ 1.03
CCDC116Q8IYX3 EI24-204ENST00000527235 1625 ntTSL 5 BASIC21.46■■□□□ 1.03
CCDC116Q8IYX3 ALDH1A3-203ENST00000557963 1670 ntBASIC21.46■■□□□ 1.03
CCDC116Q8IYX3 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC21.45■■□□□ 1.02
CCDC116Q8IYX3 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CCDC116Q8IYX3 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC21.45■■□□□ 1.02
CCDC116Q8IYX3 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
CCDC116Q8IYX3 BX664725.1-201ENST00000438252 379 ntBASIC21.45■■□□□ 1.02
CCDC116Q8IYX3 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CCDC116Q8IYX3 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC21.45■■□□□ 1.02
CCDC116Q8IYX3 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC21.45■■□□□ 1.02
CCDC116Q8IYX3 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC21.45■■□□□ 1.02
CCDC116Q8IYX3 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
CCDC116Q8IYX3 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC21.45■■□□□ 1.02
CCDC116Q8IYX3 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
CCDC116Q8IYX3 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CCDC116Q8IYX3 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CCDC116Q8IYX3 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
CCDC116Q8IYX3 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC21.44■■□□□ 1.02
CCDC116Q8IYX3 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
CCDC116Q8IYX3 CASK-201ENST00000378154 2494 ntTSL 5 BASIC21.44■■□□□ 1.02
CCDC116Q8IYX3 SENP5-202ENST00000419026 973 ntTSL 3 BASIC21.44■■□□□ 1.02
CCDC116Q8IYX3 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC21.44■■□□□ 1.02
CCDC116Q8IYX3 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
CCDC116Q8IYX3 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC21.44■■□□□ 1.02
CCDC116Q8IYX3 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms