Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC21.94■■□□□ 1.1
COL28A1Q2UY09 RHOF-204ENST00000537265 699 ntTSL 2 BASIC21.94■■□□□ 1.1
COL28A1Q2UY09 AC027682.1-201ENST00000562846 899 ntBASIC21.94■■□□□ 1.1
COL28A1Q2UY09 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC21.94■■□□□ 1.1
COL28A1Q2UY09 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC21.94■■□□□ 1.1
COL28A1Q2UY09 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC21.94■■□□□ 1.1
COL28A1Q2UY09 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
COL28A1Q2UY09 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC21.94■■□□□ 1.1
COL28A1Q2UY09 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
COL28A1Q2UY09 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
COL28A1Q2UY09 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
COL28A1Q2UY09 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC21.93■■□□□ 1.1
COL28A1Q2UY09 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC21.93■■□□□ 1.1
COL28A1Q2UY09 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC21.93■■□□□ 1.1
COL28A1Q2UY09 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC21.93■■□□□ 1.1
COL28A1Q2UY09 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC21.93■■□□□ 1.1
COL28A1Q2UY09 SNX5-217ENST00000606557 1087 ntBASIC21.93■■□□□ 1.1
COL28A1Q2UY09 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC21.92■■□□□ 1.1
COL28A1Q2UY09 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC21.92■■□□□ 1.1
COL28A1Q2UY09 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
COL28A1Q2UY09 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC21.92■■□□□ 1.1
COL28A1Q2UY09 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC21.92■■□□□ 1.1
COL28A1Q2UY09 SYT6-210ENST00000641643 1587 ntBASIC21.92■■□□□ 1.1
COL28A1Q2UY09 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC21.92■■□□□ 1.1
COL28A1Q2UY09 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
COL28A1Q2UY09 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC21.92■■□□□ 1.1
COL28A1Q2UY09 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC21.92■■□□□ 1.1
COL28A1Q2UY09 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
COL28A1Q2UY09 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
COL28A1Q2UY09 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC21.91■■□□□ 1.1
COL28A1Q2UY09 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
COL28A1Q2UY09 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
COL28A1Q2UY09 AC096887.2-201ENST00000623443 1957 ntBASIC21.91■■□□□ 1.1
COL28A1Q2UY09 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
COL28A1Q2UY09 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
COL28A1Q2UY09 HACD1-201ENST00000326961 773 ntTSL 2 BASIC21.91■■□□□ 1.1
COL28A1Q2UY09 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
COL28A1Q2UY09 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC21.91■■□□□ 1.1
COL28A1Q2UY09 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
COL28A1Q2UY09 DLX3-202ENST00000512495 834 ntTSL 2 BASIC21.91■■□□□ 1.1
COL28A1Q2UY09 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
COL28A1Q2UY09 AC008764.7-201ENST00000593779 1081 ntBASIC21.91■■□□□ 1.1
COL28A1Q2UY09 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC21.91■■□□□ 1.1
COL28A1Q2UY09 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC21.91■■□□□ 1.1
COL28A1Q2UY09 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
COL28A1Q2UY09 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC21.9■■□□□ 1.1
COL28A1Q2UY09 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC21.9■■□□□ 1.1
COL28A1Q2UY09 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
COL28A1Q2UY09 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC21.9■■□□□ 1.1
COL28A1Q2UY09 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC21.9■■□□□ 1.1
COL28A1Q2UY09 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC21.9■■□□□ 1.1
COL28A1Q2UY09 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC21.9■■□□□ 1.1
COL28A1Q2UY09 LTK-203ENST00000453182 2412 ntTSL 2 BASIC21.9■■□□□ 1.1
COL28A1Q2UY09 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
COL28A1Q2UY09 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
COL28A1Q2UY09 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC21.89■■□□□ 1.1
COL28A1Q2UY09 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC21.89■■□□□ 1.09
COL28A1Q2UY09 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC21.89■■□□□ 1.09
COL28A1Q2UY09 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC21.89■■□□□ 1.09
COL28A1Q2UY09 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC21.89■■□□□ 1.09
COL28A1Q2UY09 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC21.89■■□□□ 1.09
COL28A1Q2UY09 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
COL28A1Q2UY09 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC21.89■■□□□ 1.09
COL28A1Q2UY09 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC21.89■■□□□ 1.09
COL28A1Q2UY09 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
COL28A1Q2UY09 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC21.88■■□□□ 1.09
COL28A1Q2UY09 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
COL28A1Q2UY09 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC21.88■■□□□ 1.09
COL28A1Q2UY09 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
COL28A1Q2UY09 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
COL28A1Q2UY09 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
COL28A1Q2UY09 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC21.87■■□□□ 1.09
COL28A1Q2UY09 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
COL28A1Q2UY09 HLA-L-209ENST00000420110 1011 ntBASIC21.87■■□□□ 1.09
COL28A1Q2UY09 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
COL28A1Q2UY09 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC21.87■■□□□ 1.09
COL28A1Q2UY09 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC21.87■■□□□ 1.09
COL28A1Q2UY09 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC21.87■■□□□ 1.09
COL28A1Q2UY09 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
COL28A1Q2UY09 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
COL28A1Q2UY09 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC21.86■■□□□ 1.09
COL28A1Q2UY09 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC21.86■■□□□ 1.09
COL28A1Q2UY09 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC21.86■■□□□ 1.09
COL28A1Q2UY09 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC21.86■■□□□ 1.09
COL28A1Q2UY09 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
COL28A1Q2UY09 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
COL28A1Q2UY09 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC21.86■■□□□ 1.09
COL28A1Q2UY09 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC21.85■■□□□ 1.09
COL28A1Q2UY09 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
COL28A1Q2UY09 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
COL28A1Q2UY09 AC099791.1-201ENST00000416440 715 ntBASIC21.85■■□□□ 1.09
COL28A1Q2UY09 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC21.85■■□□□ 1.09
COL28A1Q2UY09 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC21.85■■□□□ 1.09
COL28A1Q2UY09 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC21.85■■□□□ 1.09
COL28A1Q2UY09 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC21.85■■□□□ 1.09
COL28A1Q2UY09 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC21.85■■□□□ 1.09
COL28A1Q2UY09 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
COL28A1Q2UY09 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC21.85■■□□□ 1.09
COL28A1Q2UY09 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
COL28A1Q2UY09 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms