Protein–RNA interactions for Protein: P78367

NKX3-2, Homeobox protein Nkx-3.2, humanhuman

Predictions only

Length 333 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-2P78367 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
NKX3-2P78367 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
NKX3-2P78367 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
NKX3-2P78367 AC099791.1-201ENST00000416440 715 ntBASIC25.61■■□□□ 1.69
NKX3-2P78367 AL162430.1-201ENST00000480705 870 ntBASIC25.61■■□□□ 1.69
NKX3-2P78367 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC25.61■■□□□ 1.69
NKX3-2P78367 MPST-208ENST00000628507 698 ntTSL 5 BASIC25.61■■□□□ 1.69
NKX3-2P78367 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
NKX3-2P78367 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC25.61■■□□□ 1.69
NKX3-2P78367 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC25.61■■□□□ 1.69
NKX3-2P78367 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
NKX3-2P78367 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC25.6■■□□□ 1.69
NKX3-2P78367 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
NKX3-2P78367 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC25.6■■□□□ 1.69
NKX3-2P78367 AC008764.7-201ENST00000593779 1081 ntBASIC25.6■■□□□ 1.69
NKX3-2P78367 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC25.6■■□□□ 1.69
NKX3-2P78367 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
NKX3-2P78367 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC25.59■■□□□ 1.69
NKX3-2P78367 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
NKX3-2P78367 RHOF-204ENST00000537265 699 ntTSL 2 BASIC25.59■■□□□ 1.69
NKX3-2P78367 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC25.59■■□□□ 1.69
NKX3-2P78367 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC25.59■■□□□ 1.69
NKX3-2P78367 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC25.59■■□□□ 1.69
NKX3-2P78367 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
NKX3-2P78367 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC25.59■■□□□ 1.69
NKX3-2P78367 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC25.59■■□□□ 1.69
NKX3-2P78367 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC25.58■■□□□ 1.69
NKX3-2P78367 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC25.58■■□□□ 1.69
NKX3-2P78367 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
NKX3-2P78367 JTB-203ENST00000368589 1216 ntTSL 2 BASIC25.58■■□□□ 1.69
NKX3-2P78367 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC25.58■■□□□ 1.69
NKX3-2P78367 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC25.58■■□□□ 1.69
NKX3-2P78367 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC25.58■■□□□ 1.69
NKX3-2P78367 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC25.58■■□□□ 1.69
NKX3-2P78367 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC25.58■■□□□ 1.69
NKX3-2P78367 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC25.58■■□□□ 1.69
NKX3-2P78367 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
NKX3-2P78367 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC25.57■■□□□ 1.68
NKX3-2P78367 BX842568.3-201ENST00000418104 571 ntBASIC25.57■■□□□ 1.68
NKX3-2P78367 AC233992.3-201ENST00000607491 485 ntBASIC25.57■■□□□ 1.68
NKX3-2P78367 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC25.57■■□□□ 1.68
NKX3-2P78367 LSR-205ENST00000427250 1606 ntTSL 2 BASIC25.56■■□□□ 1.68
NKX3-2P78367 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
NKX3-2P78367 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
NKX3-2P78367 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC25.56■■□□□ 1.68
NKX3-2P78367 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC25.56■■□□□ 1.68
NKX3-2P78367 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC25.55■■□□□ 1.68
NKX3-2P78367 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
NKX3-2P78367 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC25.55■■□□□ 1.68
NKX3-2P78367 MIR3181-201ENST00000578512 73 ntBASIC25.55■■□□□ 1.68
NKX3-2P78367 AL161729.1-201ENST00000604104 1402 ntBASIC25.54■■□□□ 1.68
NKX3-2P78367 SNX3-202ENST00000349379 890 ntTSL 2 BASIC25.54■■□□□ 1.68
NKX3-2P78367 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
NKX3-2P78367 AC006455.2-201ENST00000429931 906 ntBASIC25.54■■□□□ 1.68
NKX3-2P78367 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC25.54■■□□□ 1.68
NKX3-2P78367 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC25.54■■□□□ 1.68
NKX3-2P78367 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC25.53■■□□□ 1.68
NKX3-2P78367 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
NKX3-2P78367 VGF-203ENST00000611537 1622 ntTSL 5 BASIC25.53■■□□□ 1.68
NKX3-2P78367 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
NKX3-2P78367 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
NKX3-2P78367 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC25.53■■□□□ 1.68
NKX3-2P78367 DUSP8P4-201ENST00000399538 1761 ntBASIC25.53■■□□□ 1.68
NKX3-2P78367 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC25.53■■□□□ 1.68
NKX3-2P78367 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC25.52■■□□□ 1.68
NKX3-2P78367 CD37-213ENST00000598095 1598 ntTSL 2 BASIC25.52■■□□□ 1.68
NKX3-2P78367 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC25.52■■□□□ 1.68
NKX3-2P78367 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC25.52■■□□□ 1.68
NKX3-2P78367 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC25.52■■□□□ 1.68
NKX3-2P78367 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
NKX3-2P78367 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
NKX3-2P78367 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC25.52■■□□□ 1.68
NKX3-2P78367 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC25.52■■□□□ 1.68
NKX3-2P78367 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC25.51■■□□□ 1.68
NKX3-2P78367 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC25.51■■□□□ 1.67
NKX3-2P78367 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
NKX3-2P78367 GLI3-203ENST00000437480 451 ntTSL 2 BASIC25.51■■□□□ 1.67
NKX3-2P78367 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC25.51■■□□□ 1.67
NKX3-2P78367 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC25.51■■□□□ 1.67
NKX3-2P78367 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
NKX3-2P78367 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC25.51■■□□□ 1.67
NKX3-2P78367 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
NKX3-2P78367 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC25.5■■□□□ 1.67
NKX3-2P78367 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC25.5■■□□□ 1.67
NKX3-2P78367 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC25.5■■□□□ 1.67
NKX3-2P78367 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC25.5■■□□□ 1.67
NKX3-2P78367 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC25.5■■□□□ 1.67
NKX3-2P78367 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
NKX3-2P78367 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC25.5■■□□□ 1.67
NKX3-2P78367 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC25.49■■□□□ 1.67
NKX3-2P78367 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
NKX3-2P78367 AC009086.3-201ENST00000623486 1008 ntBASIC25.49■■□□□ 1.67
NKX3-2P78367 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC25.49■■□□□ 1.67
NKX3-2P78367 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC25.48■■□□□ 1.67
NKX3-2P78367 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
NKX3-2P78367 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
NKX3-2P78367 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
NKX3-2P78367 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC25.47■■□□□ 1.67
NKX3-2P78367 AL121749.1-202ENST00000609313 2153 ntBASIC25.47■■□□□ 1.67
NKX3-2P78367 AK1-201ENST00000223836 736 ntTSL 3 BASIC25.47■■□□□ 1.67
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms