Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
MSX1P28360 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC20.93■□□□□ 0.94
MSX1P28360 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC20.93■□□□□ 0.94
MSX1P28360 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
MSX1P28360 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC20.93■□□□□ 0.94
MSX1P28360 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC20.93■□□□□ 0.94
MSX1P28360 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC20.93■□□□□ 0.94
MSX1P28360 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC20.93■□□□□ 0.94
MSX1P28360 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC20.93■□□□□ 0.94
MSX1P28360 TRIR-202ENST00000588213 841 ntTSL 3 BASIC20.93■□□□□ 0.94
MSX1P28360 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC20.93■□□□□ 0.94
MSX1P28360 SNX5-217ENST00000606557 1087 ntBASIC20.93■□□□□ 0.94
MSX1P28360 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
MSX1P28360 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
MSX1P28360 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
MSX1P28360 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
MSX1P28360 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
MSX1P28360 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
MSX1P28360 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC20.93■□□□□ 0.94
MSX1P28360 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
MSX1P28360 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
MSX1P28360 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
MSX1P28360 AC131281.2-201ENST00000520478 145 ntBASIC20.92■□□□□ 0.94
MSX1P28360 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC20.92■□□□□ 0.94
MSX1P28360 AL139246.5-201ENST00000606645 996 ntBASIC20.92■□□□□ 0.94
MSX1P28360 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC20.92■□□□□ 0.94
MSX1P28360 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC20.92■□□□□ 0.94
MSX1P28360 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
MSX1P28360 PREB-202ENST00000406567 1910 ntTSL 5 BASIC20.92■□□□□ 0.94
MSX1P28360 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
MSX1P28360 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
MSX1P28360 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
MSX1P28360 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
MSX1P28360 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
MSX1P28360 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
MSX1P28360 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
MSX1P28360 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
MSX1P28360 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
MSX1P28360 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
MSX1P28360 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
MSX1P28360 RPP21-222ENST00000433076 577 ntTSL 2 BASIC20.91■□□□□ 0.94
MSX1P28360 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC20.91■□□□□ 0.94
MSX1P28360 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC20.91■□□□□ 0.94
MSX1P28360 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC20.91■□□□□ 0.94
MSX1P28360 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC20.91■□□□□ 0.94
MSX1P28360 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC20.91■□□□□ 0.94
MSX1P28360 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC20.91■□□□□ 0.94
MSX1P28360 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
MSX1P28360 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC20.9■□□□□ 0.94
MSX1P28360 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC20.9■□□□□ 0.94
MSX1P28360 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
MSX1P28360 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
MSX1P28360 SRR-208ENST00000576848 588 ntTSL 4 BASIC20.9■□□□□ 0.94
MSX1P28360 MIR6722-201ENST00000617286 78 ntBASIC20.9■□□□□ 0.94
MSX1P28360 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC20.9■□□□□ 0.94
MSX1P28360 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC20.9■□□□□ 0.94
MSX1P28360 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
MSX1P28360 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
MSX1P28360 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
MSX1P28360 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
MSX1P28360 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
MSX1P28360 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC20.89■□□□□ 0.93
MSX1P28360 NALT1-201ENST00000429224 738 ntTSL 5 BASIC20.89■□□□□ 0.93
MSX1P28360 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC20.89■□□□□ 0.93
MSX1P28360 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC20.89■□□□□ 0.93
MSX1P28360 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC20.89■□□□□ 0.93
MSX1P28360 CLTA-210ENST00000540080 989 ntTSL 2 BASIC20.89■□□□□ 0.93
MSX1P28360 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC20.89■□□□□ 0.93
MSX1P28360 RALB-208ENST00000631312 311 ntTSL 5 BASIC20.89■□□□□ 0.93
MSX1P28360 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
MSX1P28360 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC20.89■□□□□ 0.93
MSX1P28360 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
MSX1P28360 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
MSX1P28360 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
MSX1P28360 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC20.88■□□□□ 0.93
MSX1P28360 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC20.88■□□□□ 0.93
MSX1P28360 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
MSX1P28360 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
MSX1P28360 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
MSX1P28360 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
MSX1P28360 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
MSX1P28360 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC20.87■□□□□ 0.93
MSX1P28360 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC20.87■□□□□ 0.93
MSX1P28360 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC20.87■□□□□ 0.93
MSX1P28360 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC20.87■□□□□ 0.93
MSX1P28360 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
MSX1P28360 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
MSX1P28360 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
MSX1P28360 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC20.86■□□□□ 0.93
MSX1P28360 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC20.86■□□□□ 0.93
MSX1P28360 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
MSX1P28360 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
MSX1P28360 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC20.86■□□□□ 0.93
MSX1P28360 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
MSX1P28360 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC20.86■□□□□ 0.93
MSX1P28360 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC20.86■□□□□ 0.93
MSX1P28360 AC010997.5-201ENST00000609182 354 ntBASIC20.86■□□□□ 0.93
MSX1P28360 AL117332.1-201ENST00000622628 974 ntBASIC20.86■□□□□ 0.93
MSX1P28360 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
MSX1P28360 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 15.3 ms