Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC29.4■■■□□ 2.3
COL5A3P25940 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC29.4■■■□□ 2.3
COL5A3P25940 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC29.4■■■□□ 2.3
COL5A3P25940 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC29.4■■■□□ 2.3
COL5A3P25940 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC29.4■■■□□ 2.3
COL5A3P25940 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC29.4■■■□□ 2.3
COL5A3P25940 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC29.4■■■□□ 2.3
COL5A3P25940 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.3
COL5A3P25940 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.3
COL5A3P25940 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC29.39■■■□□ 2.29
COL5A3P25940 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC29.39■■■□□ 2.29
COL5A3P25940 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
COL5A3P25940 HES6-206ENST00000409574 738 ntTSL 2 BASIC29.38■■■□□ 2.29
COL5A3P25940 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC29.38■■■□□ 2.29
COL5A3P25940 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC29.38■■■□□ 2.29
COL5A3P25940 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
COL5A3P25940 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC29.37■■■□□ 2.29
COL5A3P25940 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC29.37■■■□□ 2.29
COL5A3P25940 NKILA-201ENST00000613231 537 ntTSL 4 BASIC29.37■■■□□ 2.29
COL5A3P25940 AC241377.3-202ENST00000626088 1088 ntBASIC29.37■■■□□ 2.29
COL5A3P25940 AC241585.3-202ENST00000628937 1088 ntBASIC29.37■■■□□ 2.29
COL5A3P25940 AC245100.8-202ENST00000629247 1058 ntBASIC29.37■■■□□ 2.29
COL5A3P25940 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC29.37■■■□□ 2.29
COL5A3P25940 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC29.37■■■□□ 2.29
COL5A3P25940 AL031602.1-201ENST00000633169 911 ntBASIC29.37■■■□□ 2.29
COL5A3P25940 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC29.36■■■□□ 2.29
COL5A3P25940 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC29.36■■■□□ 2.29
COL5A3P25940 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC29.36■■■□□ 2.29
COL5A3P25940 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC29.36■■■□□ 2.29
COL5A3P25940 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC29.36■■■□□ 2.29
COL5A3P25940 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC29.35■■■□□ 2.29
COL5A3P25940 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC29.35■■■□□ 2.29
COL5A3P25940 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC29.35■■■□□ 2.29
COL5A3P25940 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC29.35■■■□□ 2.29
COL5A3P25940 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC29.35■■■□□ 2.29
COL5A3P25940 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC29.35■■■□□ 2.29
COL5A3P25940 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC29.35■■■□□ 2.29
COL5A3P25940 CD37-213ENST00000598095 1598 ntTSL 2 BASIC29.35■■■□□ 2.29
COL5A3P25940 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC29.35■■■□□ 2.29
COL5A3P25940 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC29.34■■■□□ 2.29
COL5A3P25940 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC29.34■■■□□ 2.29
COL5A3P25940 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC29.34■■■□□ 2.29
COL5A3P25940 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC29.34■■■□□ 2.29
COL5A3P25940 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC29.34■■■□□ 2.29
COL5A3P25940 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC29.34■■■□□ 2.29
COL5A3P25940 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC29.34■■■□□ 2.29
COL5A3P25940 KRT18P5-201ENST00000436075 1291 ntBASIC29.34■■■□□ 2.29
COL5A3P25940 IKBKGP1-201ENST00000612193 1073 ntBASIC29.34■■■□□ 2.29
COL5A3P25940 AC034268.1-201ENST00000441047 882 ntBASIC29.33■■■□□ 2.29
COL5A3P25940 SP2-202ENST00000613139 908 ntTSL 5 BASIC29.33■■■□□ 2.29
COL5A3P25940 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC29.32■■■□□ 2.28
COL5A3P25940 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC29.32■■■□□ 2.28
COL5A3P25940 BX842568.3-201ENST00000418104 571 ntBASIC29.32■■■□□ 2.28
COL5A3P25940 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC29.32■■■□□ 2.28
COL5A3P25940 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC29.32■■■□□ 2.28
COL5A3P25940 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC29.32■■■□□ 2.28
COL5A3P25940 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC29.32■■■□□ 2.28
COL5A3P25940 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC29.32■■■□□ 2.28
COL5A3P25940 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC29.31■■■□□ 2.28
COL5A3P25940 SLC47A1P1-202ENST00000449666 945 ntBASIC29.31■■■□□ 2.28
COL5A3P25940 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC29.31■■■□□ 2.28
COL5A3P25940 AC090192.1-201ENST00000517740 490 ntBASIC29.31■■■□□ 2.28
COL5A3P25940 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC29.31■■■□□ 2.28
COL5A3P25940 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC29.31■■■□□ 2.28
COL5A3P25940 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC29.31■■■□□ 2.28
COL5A3P25940 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC29.31■■■□□ 2.28
COL5A3P25940 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC29.31■■■□□ 2.28
COL5A3P25940 AC027612.3-201ENST00000413684 1047 ntBASIC29.3■■■□□ 2.28
COL5A3P25940 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC29.3■■■□□ 2.28
COL5A3P25940 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC29.3■■■□□ 2.28
COL5A3P25940 AC233992.3-201ENST00000607491 485 ntBASIC29.3■■■□□ 2.28
COL5A3P25940 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC29.29■■■□□ 2.28
COL5A3P25940 SLC6A10P-202ENST00000431994 2058 ntBASIC29.29■■■□□ 2.28
COL5A3P25940 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC29.29■■■□□ 2.28
COL5A3P25940 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC29.29■■■□□ 2.28
COL5A3P25940 MPST-208ENST00000628507 698 ntTSL 5 BASIC29.29■■■□□ 2.28
COL5A3P25940 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC29.29■■■□□ 2.28
COL5A3P25940 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC29.29■■■□□ 2.28
COL5A3P25940 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC29.29■■■□□ 2.28
COL5A3P25940 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC29.28■■■□□ 2.28
COL5A3P25940 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC29.28■■■□□ 2.28
COL5A3P25940 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC29.28■■■□□ 2.28
COL5A3P25940 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC29.28■■■□□ 2.28
COL5A3P25940 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC29.28■■■□□ 2.28
COL5A3P25940 AC009086.3-201ENST00000623486 1008 ntBASIC29.28■■■□□ 2.28
COL5A3P25940 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC29.28■■■□□ 2.28
COL5A3P25940 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC29.27■■■□□ 2.28
COL5A3P25940 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC29.27■■■□□ 2.28
COL5A3P25940 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC29.27■■■□□ 2.28
COL5A3P25940 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC29.27■■■□□ 2.28
COL5A3P25940 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC29.27■■■□□ 2.28
COL5A3P25940 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC29.26■■■□□ 2.27
COL5A3P25940 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC29.26■■■□□ 2.27
COL5A3P25940 AK1-201ENST00000223836 736 ntTSL 3 BASIC29.25■■■□□ 2.27
COL5A3P25940 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
COL5A3P25940 ASB1-202ENST00000409297 878 ntTSL 5 BASIC29.25■■■□□ 2.27
COL5A3P25940 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC29.25■■■□□ 2.27
COL5A3P25940 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC29.25■■■□□ 2.27
COL5A3P25940 AL022069.1-201ENST00000568025 1636 ntBASIC29.25■■■□□ 2.27
COL5A3P25940 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC29.25■■■□□ 2.27
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms