Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC27.04■■□□□ 1.92
HMGB1P09429 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC27.04■■□□□ 1.92
HMGB1P09429 EI24-204ENST00000527235 1625 ntTSL 5 BASIC27.04■■□□□ 1.92
HMGB1P09429 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC27.04■■□□□ 1.92
HMGB1P09429 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC27.04■■□□□ 1.92
HMGB1P09429 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC27.04■■□□□ 1.92
HMGB1P09429 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
HMGB1P09429 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC27.03■■□□□ 1.92
HMGB1P09429 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC27.03■■□□□ 1.92
HMGB1P09429 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC27.03■■□□□ 1.92
HMGB1P09429 RARA-203ENST00000394086 2008 ntTSL 2 BASIC27.03■■□□□ 1.92
HMGB1P09429 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC27.03■■□□□ 1.92
HMGB1P09429 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC27.03■■□□□ 1.92
HMGB1P09429 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC27.03■■□□□ 1.92
HMGB1P09429 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC27.03■■□□□ 1.92
HMGB1P09429 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC27.03■■□□□ 1.92
HMGB1P09429 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC27.03■■□□□ 1.92
HMGB1P09429 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC27.02■■□□□ 1.92
HMGB1P09429 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
HMGB1P09429 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
HMGB1P09429 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC27.02■■□□□ 1.92
HMGB1P09429 PRTG-204ENST00000561292 833 ntTSL 3 BASIC27.02■■□□□ 1.92
HMGB1P09429 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC27.02■■□□□ 1.92
HMGB1P09429 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC27.02■■□□□ 1.92
HMGB1P09429 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC27.02■■□□□ 1.92
HMGB1P09429 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
HMGB1P09429 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.92
HMGB1P09429 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC27.01■■□□□ 1.92
HMGB1P09429 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
HMGB1P09429 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
HMGB1P09429 TK2-202ENST00000417693 1046 ntTSL 2 BASIC27.01■■□□□ 1.91
HMGB1P09429 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
HMGB1P09429 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC27.01■■□□□ 1.91
HMGB1P09429 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC27.01■■□□□ 1.91
HMGB1P09429 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC27.01■■□□□ 1.91
HMGB1P09429 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC27.01■■□□□ 1.91
HMGB1P09429 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC27■■□□□ 1.91
HMGB1P09429 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC27■■□□□ 1.91
HMGB1P09429 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC27■■□□□ 1.91
HMGB1P09429 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC27■■□□□ 1.91
HMGB1P09429 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC27■■□□□ 1.91
HMGB1P09429 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC27■■□□□ 1.91
HMGB1P09429 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC27■■□□□ 1.91
HMGB1P09429 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC27■■□□□ 1.91
HMGB1P09429 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC26.99■■□□□ 1.91
HMGB1P09429 RARRES2P1-201ENST00000474487 481 ntBASIC26.99■■□□□ 1.91
HMGB1P09429 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC26.99■■□□□ 1.91
HMGB1P09429 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC26.99■■□□□ 1.91
HMGB1P09429 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC26.99■■□□□ 1.91
HMGB1P09429 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.91
HMGB1P09429 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC26.99■■□□□ 1.91
HMGB1P09429 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
HMGB1P09429 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC26.98■■□□□ 1.91
HMGB1P09429 AC021242.3-201ENST00000607598 1377 ntBASIC26.98■■□□□ 1.91
HMGB1P09429 BX664725.1-201ENST00000438252 379 ntBASIC26.98■■□□□ 1.91
HMGB1P09429 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC26.98■■□□□ 1.91
HMGB1P09429 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
HMGB1P09429 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
HMGB1P09429 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC26.97■■□□□ 1.91
HMGB1P09429 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC26.97■■□□□ 1.91
HMGB1P09429 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC26.97■■□□□ 1.91
HMGB1P09429 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
HMGB1P09429 SNX5-217ENST00000606557 1087 ntBASIC26.97■■□□□ 1.91
HMGB1P09429 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC26.97■■□□□ 1.91
HMGB1P09429 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC26.97■■□□□ 1.91
HMGB1P09429 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC26.97■■□□□ 1.91
HMGB1P09429 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC26.96■■□□□ 1.91
HMGB1P09429 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC26.96■■□□□ 1.91
HMGB1P09429 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC26.96■■□□□ 1.91
HMGB1P09429 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC26.96■■□□□ 1.91
HMGB1P09429 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC26.96■■□□□ 1.91
HMGB1P09429 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC26.96■■□□□ 1.91
HMGB1P09429 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC26.96■■□□□ 1.91
HMGB1P09429 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC26.95■■□□□ 1.91
HMGB1P09429 SENP5-202ENST00000419026 973 ntTSL 3 BASIC26.95■■□□□ 1.9
HMGB1P09429 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.9
HMGB1P09429 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC26.95■■□□□ 1.9
HMGB1P09429 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC26.95■■□□□ 1.9
HMGB1P09429 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.9
HMGB1P09429 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC26.95■■□□□ 1.9
HMGB1P09429 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC26.94■■□□□ 1.9
HMGB1P09429 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC26.94■■□□□ 1.9
HMGB1P09429 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC26.94■■□□□ 1.9
HMGB1P09429 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC26.94■■□□□ 1.9
HMGB1P09429 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC26.94■■□□□ 1.9
HMGB1P09429 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC26.94■■□□□ 1.9
HMGB1P09429 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC26.94■■□□□ 1.9
HMGB1P09429 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
HMGB1P09429 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
HMGB1P09429 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
HMGB1P09429 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC26.93■■□□□ 1.9
HMGB1P09429 RNF146-205ENST00000477776 762 ntTSL 3 BASIC26.93■■□□□ 1.9
HMGB1P09429 Z92544.1-202ENST00000571933 1220 ntBASIC26.93■■□□□ 1.9
HMGB1P09429 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC26.93■■□□□ 1.9
HMGB1P09429 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC26.93■■□□□ 1.9
HMGB1P09429 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC26.92■■□□□ 1.9
HMGB1P09429 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
HMGB1P09429 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC26.92■■□□□ 1.9
HMGB1P09429 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC26.92■■□□□ 1.9
HMGB1P09429 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC26.92■■□□□ 1.9
Retrieved 100 of 98,524 protein–RNA pairs in 18.6 ms