Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CXCL1P09341 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CXCL1P09341 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC17.72■□□□□ 0.43
CXCL1P09341 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CXCL1P09341 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
CXCL1P09341 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CXCL1P09341 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CXCL1P09341 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
CXCL1P09341 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CXCL1P09341 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC17.71■□□□□ 0.43
CXCL1P09341 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
CXCL1P09341 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CXCL1P09341 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CXCL1P09341 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
CXCL1P09341 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
CXCL1P09341 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
CXCL1P09341 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
CXCL1P09341 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
CXCL1P09341 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
CXCL1P09341 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CXCL1P09341 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC17.7■□□□□ 0.42
CXCL1P09341 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
CXCL1P09341 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC17.7■□□□□ 0.42
CXCL1P09341 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC17.7■□□□□ 0.42
CXCL1P09341 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC17.7■□□□□ 0.42
CXCL1P09341 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC17.7■□□□□ 0.42
CXCL1P09341 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC17.69■□□□□ 0.42
CXCL1P09341 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CXCL1P09341 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CXCL1P09341 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
CXCL1P09341 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC17.69■□□□□ 0.42
CXCL1P09341 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC17.69■□□□□ 0.42
CXCL1P09341 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
CXCL1P09341 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CXCL1P09341 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CXCL1P09341 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC17.68■□□□□ 0.42
CXCL1P09341 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CXCL1P09341 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CXCL1P09341 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CXCL1P09341 BOD1-206ENST00000480951 814 ntTSL 2 BASIC17.68■□□□□ 0.42
CXCL1P09341 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
CXCL1P09341 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC17.68■□□□□ 0.42
CXCL1P09341 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
CXCL1P09341 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CXCL1P09341 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CXCL1P09341 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CXCL1P09341 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CXCL1P09341 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
CXCL1P09341 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
CXCL1P09341 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CXCL1P09341 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
CXCL1P09341 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC17.67■□□□□ 0.42
CXCL1P09341 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC17.67■□□□□ 0.42
CXCL1P09341 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC17.67■□□□□ 0.42
CXCL1P09341 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC17.67■□□□□ 0.42
CXCL1P09341 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
CXCL1P09341 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CXCL1P09341 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
CXCL1P09341 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CXCL1P09341 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC17.66■□□□□ 0.42
CXCL1P09341 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CXCL1P09341 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CXCL1P09341 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
CXCL1P09341 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CXCL1P09341 AC008813.1-201ENST00000536597 885 ntBASIC17.66■□□□□ 0.42
CXCL1P09341 AC021231.2-201ENST00000594613 730 ntBASIC17.66■□□□□ 0.42
CXCL1P09341 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CXCL1P09341 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
CXCL1P09341 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CXCL1P09341 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CXCL1P09341 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC17.66■□□□□ 0.42
CXCL1P09341 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CXCL1P09341 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CXCL1P09341 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CXCL1P09341 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
CXCL1P09341 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CXCL1P09341 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
CXCL1P09341 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC17.65■□□□□ 0.42
CXCL1P09341 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
CXCL1P09341 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CXCL1P09341 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CXCL1P09341 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CXCL1P09341 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
CXCL1P09341 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CXCL1P09341 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC17.64■□□□□ 0.41
CXCL1P09341 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CXCL1P09341 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CXCL1P09341 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
CXCL1P09341 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CXCL1P09341 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CXCL1P09341 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CXCL1P09341 AC148477.6-201ENST00000623746 465 ntBASIC17.64■□□□□ 0.41
CXCL1P09341 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CXCL1P09341 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CXCL1P09341 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
CXCL1P09341 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC17.64■□□□□ 0.41
CXCL1P09341 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC17.63■□□□□ 0.41
CXCL1P09341 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
CXCL1P09341 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CXCL1P09341 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 18.6 ms