Protein–RNA interactions for Protein: P05538

HLA-DQB2, HLA class II histocompatibility antigen, DQ beta 2 chain, humanhuman

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQB2P05538 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC23.28■■□□□ 1.32
HLA-DQB2P05538 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC23.28■■□□□ 1.32
HLA-DQB2P05538 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC23.28■■□□□ 1.32
HLA-DQB2P05538 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC23.28■■□□□ 1.32
HLA-DQB2P05538 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC23.28■■□□□ 1.32
HLA-DQB2P05538 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
HLA-DQB2P05538 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC23.28■■□□□ 1.32
HLA-DQB2P05538 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
HLA-DQB2P05538 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC23.28■■□□□ 1.32
HLA-DQB2P05538 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC23.27■■□□□ 1.32
HLA-DQB2P05538 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
HLA-DQB2P05538 AC239859.2-201ENST00000444165 318 ntBASIC23.27■■□□□ 1.32
HLA-DQB2P05538 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC23.27■■□□□ 1.32
HLA-DQB2P05538 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC23.27■■□□□ 1.32
HLA-DQB2P05538 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC23.27■■□□□ 1.32
HLA-DQB2P05538 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC23.27■■□□□ 1.32
HLA-DQB2P05538 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
HLA-DQB2P05538 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC23.27■■□□□ 1.32
HLA-DQB2P05538 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC23.26■■□□□ 1.31
HLA-DQB2P05538 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC23.26■■□□□ 1.31
HLA-DQB2P05538 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
HLA-DQB2P05538 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
HLA-DQB2P05538 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
HLA-DQB2P05538 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC23.26■■□□□ 1.31
HLA-DQB2P05538 KRT125P-201ENST00000546827 989 ntBASIC23.26■■□□□ 1.31
HLA-DQB2P05538 AL035685.1-201ENST00000636663 812 ntBASIC23.26■■□□□ 1.31
HLA-DQB2P05538 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
HLA-DQB2P05538 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
HLA-DQB2P05538 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
HLA-DQB2P05538 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC23.25■■□□□ 1.31
HLA-DQB2P05538 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
HLA-DQB2P05538 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
HLA-DQB2P05538 LSM7-203ENST00000585409 512 ntTSL 2 BASIC23.25■■□□□ 1.31
HLA-DQB2P05538 EI24-204ENST00000527235 1625 ntTSL 5 BASIC23.25■■□□□ 1.31
HLA-DQB2P05538 ALDH1A3-203ENST00000557963 1670 ntBASIC23.25■■□□□ 1.31
HLA-DQB2P05538 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
HLA-DQB2P05538 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
HLA-DQB2P05538 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
HLA-DQB2P05538 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
HLA-DQB2P05538 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
HLA-DQB2P05538 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC23.24■■□□□ 1.31
HLA-DQB2P05538 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC23.24■■□□□ 1.31
HLA-DQB2P05538 MIR4787-201ENST00000607364 84 ntBASIC23.24■■□□□ 1.31
HLA-DQB2P05538 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC23.24■■□□□ 1.31
HLA-DQB2P05538 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
HLA-DQB2P05538 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
HLA-DQB2P05538 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC23.23■■□□□ 1.31
HLA-DQB2P05538 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC23.23■■□□□ 1.31
HLA-DQB2P05538 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC23.23■■□□□ 1.31
HLA-DQB2P05538 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC23.23■■□□□ 1.31
HLA-DQB2P05538 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC23.23■■□□□ 1.31
HLA-DQB2P05538 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC23.23■■□□□ 1.31
HLA-DQB2P05538 CLTA-210ENST00000540080 989 ntTSL 2 BASIC23.23■■□□□ 1.31
HLA-DQB2P05538 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC23.23■■□□□ 1.31
HLA-DQB2P05538 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC23.23■■□□□ 1.31
HLA-DQB2P05538 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
HLA-DQB2P05538 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
HLA-DQB2P05538 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
HLA-DQB2P05538 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC23.23■■□□□ 1.31
HLA-DQB2P05538 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
HLA-DQB2P05538 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC23.22■■□□□ 1.31
HLA-DQB2P05538 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC23.22■■□□□ 1.31
HLA-DQB2P05538 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC23.22■■□□□ 1.31
HLA-DQB2P05538 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC23.22■■□□□ 1.31
HLA-DQB2P05538 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC23.22■■□□□ 1.31
HLA-DQB2P05538 AC092028.1-203ENST00000608262 953 ntBASIC23.22■■□□□ 1.31
HLA-DQB2P05538 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC23.22■■□□□ 1.31
HLA-DQB2P05538 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
HLA-DQB2P05538 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC23.22■■□□□ 1.31
HLA-DQB2P05538 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC23.22■■□□□ 1.31
HLA-DQB2P05538 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
HLA-DQB2P05538 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
HLA-DQB2P05538 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
HLA-DQB2P05538 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC23.22■■□□□ 1.31
HLA-DQB2P05538 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC23.22■■□□□ 1.31
HLA-DQB2P05538 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC23.21■■□□□ 1.31
HLA-DQB2P05538 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC23.21■■□□□ 1.31
HLA-DQB2P05538 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
HLA-DQB2P05538 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC23.21■■□□□ 1.31
HLA-DQB2P05538 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC23.21■■□□□ 1.31
HLA-DQB2P05538 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC23.21■■□□□ 1.31
HLA-DQB2P05538 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC23.21■■□□□ 1.31
HLA-DQB2P05538 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC23.21■■□□□ 1.31
HLA-DQB2P05538 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC23.21■■□□□ 1.31
HLA-DQB2P05538 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
HLA-DQB2P05538 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC23.2■■□□□ 1.3
HLA-DQB2P05538 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC23.2■■□□□ 1.3
HLA-DQB2P05538 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC23.2■■□□□ 1.3
HLA-DQB2P05538 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC23.2■■□□□ 1.3
HLA-DQB2P05538 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC23.2■■□□□ 1.3
HLA-DQB2P05538 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC23.2■■□□□ 1.3
HLA-DQB2P05538 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC23.2■■□□□ 1.3
HLA-DQB2P05538 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
HLA-DQB2P05538 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC23.2■■□□□ 1.3
HLA-DQB2P05538 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC23.2■■□□□ 1.3
HLA-DQB2P05538 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC23.2■■□□□ 1.3
HLA-DQB2P05538 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
HLA-DQB2P05538 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC23.19■■□□□ 1.3
HLA-DQB2P05538 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
HLA-DQB2P05538 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC23.19■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms