Protein–RNA interactions for Protein: P02452

COL1A1, Collagen alpha-1(I) chain, humanhuman

Predicted RBP Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1P02452 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC27.88■■■□□ 2.05
COL1A1P02452 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC27.88■■■□□ 2.05
COL1A1P02452 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC27.88■■■□□ 2.05
COL1A1P02452 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC27.88■■■□□ 2.05
COL1A1P02452 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC27.88■■■□□ 2.05
COL1A1P02452 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC27.88■■■□□ 2.05
COL1A1P02452 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC27.88■■■□□ 2.05
COL1A1P02452 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC27.88■■■□□ 2.05
COL1A1P02452 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC27.87■■■□□ 2.05
COL1A1P02452 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC27.87■■■□□ 2.05
COL1A1P02452 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC27.87■■■□□ 2.05
COL1A1P02452 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC27.87■■■□□ 2.05
COL1A1P02452 REST-206ENST00000612429 1376 ntTSL 5 BASIC27.87■■■□□ 2.05
COL1A1P02452 REST-207ENST00000616975 1370 ntTSL 5 BASIC27.87■■■□□ 2.05
COL1A1P02452 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC27.87■■■□□ 2.05
COL1A1P02452 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC27.87■■■□□ 2.05
COL1A1P02452 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC27.87■■■□□ 2.05
COL1A1P02452 SRD5A1P1-201ENST00000442297 786 ntBASIC27.87■■■□□ 2.05
COL1A1P02452 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC27.87■■■□□ 2.05
COL1A1P02452 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC27.87■■■□□ 2.05
COL1A1P02452 AL022069.1-201ENST00000568025 1636 ntBASIC27.86■■■□□ 2.05
COL1A1P02452 CREM-210ENST00000374721 2020 ntTSL 5 BASIC27.86■■■□□ 2.05
COL1A1P02452 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC27.86■■■□□ 2.05
COL1A1P02452 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC27.86■■■□□ 2.05
COL1A1P02452 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC27.86■■■□□ 2.05
COL1A1P02452 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC27.86■■■□□ 2.05
COL1A1P02452 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC27.86■■■□□ 2.05
COL1A1P02452 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC27.86■■■□□ 2.05
COL1A1P02452 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC27.85■■■□□ 2.05
COL1A1P02452 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC27.85■■■□□ 2.05
COL1A1P02452 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC27.85■■■□□ 2.05
COL1A1P02452 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC27.85■■■□□ 2.05
COL1A1P02452 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC27.85■■■□□ 2.05
COL1A1P02452 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC27.85■■■□□ 2.05
COL1A1P02452 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC27.85■■■□□ 2.05
COL1A1P02452 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC27.85■■■□□ 2.05
COL1A1P02452 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC27.85■■■□□ 2.05
COL1A1P02452 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC27.84■■■□□ 2.05
COL1A1P02452 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC27.84■■■□□ 2.05
COL1A1P02452 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC27.84■■■□□ 2.05
COL1A1P02452 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC27.84■■■□□ 2.05
COL1A1P02452 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC27.84■■■□□ 2.05
COL1A1P02452 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC27.84■■■□□ 2.05
COL1A1P02452 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC27.84■■■□□ 2.05
COL1A1P02452 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC27.84■■■□□ 2.05
COL1A1P02452 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC27.84■■■□□ 2.05
COL1A1P02452 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC27.83■■■□□ 2.05
COL1A1P02452 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC27.83■■■□□ 2.05
COL1A1P02452 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC27.83■■■□□ 2.05
COL1A1P02452 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC27.83■■■□□ 2.05
COL1A1P02452 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC27.83■■■□□ 2.05
COL1A1P02452 GATM-206ENST00000558336 1522 ntTSL 2 BASIC27.83■■■□□ 2.05
COL1A1P02452 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC27.83■■■□□ 2.05
COL1A1P02452 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC27.83■■■□□ 2.05
COL1A1P02452 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC27.83■■■□□ 2.04
COL1A1P02452 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC27.83■■■□□ 2.04
COL1A1P02452 AC024257.2-201ENST00000549699 147 ntBASIC27.83■■■□□ 2.04
COL1A1P02452 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC27.83■■■□□ 2.04
COL1A1P02452 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC27.82■■■□□ 2.04
COL1A1P02452 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC27.82■■■□□ 2.04
COL1A1P02452 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC27.82■■■□□ 2.04
COL1A1P02452 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC27.82■■■□□ 2.04
COL1A1P02452 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC27.82■■■□□ 2.04
COL1A1P02452 AC104564.3-201ENST00000582367 638 ntBASIC27.82■■■□□ 2.04
COL1A1P02452 AL355001.2-201ENST00000620617 1191 ntBASIC27.82■■■□□ 2.04
COL1A1P02452 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC27.82■■■□□ 2.04
COL1A1P02452 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC27.81■■■□□ 2.04
COL1A1P02452 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC27.81■■■□□ 2.04
COL1A1P02452 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC27.81■■■□□ 2.04
COL1A1P02452 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC27.81■■■□□ 2.04
COL1A1P02452 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC27.81■■■□□ 2.04
COL1A1P02452 MIR5787-201ENST00000611784 55 ntBASIC27.81■■■□□ 2.04
COL1A1P02452 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC27.81■■■□□ 2.04
COL1A1P02452 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC27.81■■■□□ 2.04
COL1A1P02452 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC27.8■■■□□ 2.04
COL1A1P02452 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC27.8■■■□□ 2.04
COL1A1P02452 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC27.8■■■□□ 2.04
COL1A1P02452 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC27.8■■■□□ 2.04
COL1A1P02452 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC27.79■■■□□ 2.04
COL1A1P02452 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC27.79■■■□□ 2.04
COL1A1P02452 AC092666.2-201ENST00000613287 246 ntBASIC27.79■■■□□ 2.04
COL1A1P02452 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC27.79■■■□□ 2.04
COL1A1P02452 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC27.79■■■□□ 2.04
COL1A1P02452 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC27.79■■■□□ 2.04
COL1A1P02452 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC27.79■■■□□ 2.04
COL1A1P02452 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC27.79■■■□□ 2.04
COL1A1P02452 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC27.78■■■□□ 2.04
COL1A1P02452 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC27.78■■■□□ 2.04
COL1A1P02452 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC27.78■■■□□ 2.04
COL1A1P02452 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC27.77■■■□□ 2.04
COL1A1P02452 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC27.77■■■□□ 2.04
COL1A1P02452 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC27.77■■■□□ 2.04
COL1A1P02452 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC27.77■■■□□ 2.04
COL1A1P02452 AC138932.3-201ENST00000567634 1902 ntBASIC27.77■■■□□ 2.04
COL1A1P02452 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC27.77■■■□□ 2.04
COL1A1P02452 SF1-220ENST00000626028 704 ntTSL 2 BASIC27.77■■■□□ 2.04
COL1A1P02452 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC27.77■■■□□ 2.04
COL1A1P02452 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC27.77■■■□□ 2.04
COL1A1P02452 AC009102.2-201ENST00000606772 1639 ntBASIC27.77■■■□□ 2.04
COL1A1P02452 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC27.77■■■□□ 2.04
Retrieved 100 of 98,524 protein–RNA pairs in 14.6 ms