Protein–RNA interactions for Protein: O95639

CPSF4, Cleavage and polyadenylation specificity factor subunit 4, humanhuman

Known RBP Predictions only

Length 269 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4O95639 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC21.71■■□□□ 1.07
CPSF4O95639 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CPSF4O95639 C9orf163-202ENST00000624034 2573 ntBASIC21.71■■□□□ 1.07
CPSF4O95639 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
CPSF4O95639 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC21.71■■□□□ 1.07
CPSF4O95639 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.07
CPSF4O95639 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.07
CPSF4O95639 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
CPSF4O95639 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CPSF4O95639 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CPSF4O95639 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
CPSF4O95639 BRD4-212ENST00000630599 726 ntTSL 2 BASIC21.7■■□□□ 1.06
CPSF4O95639 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CPSF4O95639 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CPSF4O95639 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CPSF4O95639 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
CPSF4O95639 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC21.69■■□□□ 1.06
CPSF4O95639 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CPSF4O95639 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC21.69■■□□□ 1.06
CPSF4O95639 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CPSF4O95639 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CPSF4O95639 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CPSF4O95639 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
CPSF4O95639 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CPSF4O95639 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CPSF4O95639 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CPSF4O95639 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CPSF4O95639 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC21.68■■□□□ 1.06
CPSF4O95639 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CPSF4O95639 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC21.68■■□□□ 1.06
CPSF4O95639 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
CPSF4O95639 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CPSF4O95639 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC21.68■■□□□ 1.06
CPSF4O95639 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC21.68■■□□□ 1.06
CPSF4O95639 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
CPSF4O95639 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC21.68■■□□□ 1.06
CPSF4O95639 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC21.68■■□□□ 1.06
CPSF4O95639 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
CPSF4O95639 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
CPSF4O95639 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC21.68■■□□□ 1.06
CPSF4O95639 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC21.67■■□□□ 1.06
CPSF4O95639 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CPSF4O95639 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
CPSF4O95639 AC139795.1-202ENST00000500444 432 ntBASIC21.67■■□□□ 1.06
CPSF4O95639 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC21.67■■□□□ 1.06
CPSF4O95639 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
CPSF4O95639 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
CPSF4O95639 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CPSF4O95639 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CPSF4O95639 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC21.66■■□□□ 1.06
CPSF4O95639 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC21.66■■□□□ 1.06
CPSF4O95639 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
CPSF4O95639 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CPSF4O95639 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CPSF4O95639 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CPSF4O95639 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CPSF4O95639 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC21.65■■□□□ 1.06
CPSF4O95639 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CPSF4O95639 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC21.65■■□□□ 1.06
CPSF4O95639 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
CPSF4O95639 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
CPSF4O95639 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CPSF4O95639 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC21.65■■□□□ 1.06
CPSF4O95639 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC21.65■■□□□ 1.06
CPSF4O95639 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC21.65■■□□□ 1.06
CPSF4O95639 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CPSF4O95639 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CPSF4O95639 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CPSF4O95639 CD37-213ENST00000598095 1598 ntTSL 2 BASIC21.65■■□□□ 1.06
CPSF4O95639 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.06
CPSF4O95639 EI24-213ENST00000618552 1747 ntTSL 5 BASIC21.64■■□□□ 1.06
CPSF4O95639 ABHD17AP5-201ENST00000580133 923 ntBASIC21.64■■□□□ 1.05
CPSF4O95639 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC21.64■■□□□ 1.05
CPSF4O95639 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
CPSF4O95639 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CPSF4O95639 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC21.63■■□□□ 1.05
CPSF4O95639 AL161729.1-201ENST00000604104 1402 ntBASIC21.63■■□□□ 1.05
CPSF4O95639 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CPSF4O95639 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC21.63■■□□□ 1.05
CPSF4O95639 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CPSF4O95639 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CPSF4O95639 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CPSF4O95639 AL022069.1-201ENST00000568025 1636 ntBASIC21.63■■□□□ 1.05
CPSF4O95639 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC21.63■■□□□ 1.05
CPSF4O95639 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CPSF4O95639 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC21.63■■□□□ 1.05
CPSF4O95639 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CPSF4O95639 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CPSF4O95639 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CPSF4O95639 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CPSF4O95639 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC21.63■■□□□ 1.05
CPSF4O95639 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CPSF4O95639 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC21.62■■□□□ 1.05
CPSF4O95639 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CPSF4O95639 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CPSF4O95639 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CPSF4O95639 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
CPSF4O95639 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
CPSF4O95639 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC21.62■■□□□ 1.05
CPSF4O95639 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC21.62■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 14.4 ms