Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
LIMA1Q9UHB6 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LIMA1Q9UHB6 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LIMA1Q9UHB6 AC092535.1-201ENST00000417557 2165 ntTSL 2 BASIC16.28■□□□□ 0.2
LIMA1Q9UHB6 ATL2-210ENST00000452935 2199 ntTSL 2 BASIC16.28■□□□□ 0.2
LIMA1Q9UHB6 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
LIMA1Q9UHB6 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
LIMA1Q9UHB6 ZNF251-201ENST00000292562 2807 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
LIMA1Q9UHB6 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
LIMA1Q9UHB6 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LIMA1Q9UHB6 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC16.28■□□□□ 0.2
LIMA1Q9UHB6 MAGEA4-201ENST00000276344 1724 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
LIMA1Q9UHB6 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
LIMA1Q9UHB6 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LIMA1Q9UHB6 AC126755.1-201ENST00000525846 6405 ntBASIC16.28■□□□□ 0.2
LIMA1Q9UHB6 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LIMA1Q9UHB6 CTNND2-202ENST00000458100 1962 ntTSL 5 BASIC16.28■□□□□ 0.2
LIMA1Q9UHB6 DDX41-208ENST00000507955 2607 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LIMA1Q9UHB6 SMG8-201ENST00000300917 3263 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LIMA1Q9UHB6 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC16.28■□□□□ 0.2
LIMA1Q9UHB6 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC16.28■□□□□ 0.2
LIMA1Q9UHB6 MFAP4-202ENST00000395592 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
LIMA1Q9UHB6 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LIMA1Q9UHB6 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LIMA1Q9UHB6 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
LIMA1Q9UHB6 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LIMA1Q9UHB6 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC16.28■□□□□ 0.2
LIMA1Q9UHB6 ACKR1-201ENST00000368121 1240 ntBASIC16.28■□□□□ 0.2
LIMA1Q9UHB6 CALY-202ENST00000368555 783 ntTSL 2 BASIC16.28■□□□□ 0.2
LIMA1Q9UHB6 FO681548.1-201ENST00000455617 1132 ntBASIC16.28■□□□□ 0.2
LIMA1Q9UHB6 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC16.28■□□□□ 0.2
LIMA1Q9UHB6 HNRNPA1P13-201ENST00000510646 963 ntBASIC16.28■□□□□ 0.2
LIMA1Q9UHB6 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC16.28■□□□□ 0.2
LIMA1Q9UHB6 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC16.28■□□□□ 0.2
LIMA1Q9UHB6 VPS18-202ENST00000558474 873 ntTSL 3 BASIC16.28■□□□□ 0.2
LIMA1Q9UHB6 AC103988.2-201ENST00000561804 725 ntBASIC16.28■□□□□ 0.2
LIMA1Q9UHB6 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
LIMA1Q9UHB6 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
LIMA1Q9UHB6 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC16.28■□□□□ 0.2
LIMA1Q9UHB6 AP001002.3-201ENST00000623482 206 ntBASIC16.28■□□□□ 0.2
LIMA1Q9UHB6 CHD1L-211ENST00000639534 1144 ntTSL 5 BASIC16.28■□□□□ 0.2
LIMA1Q9UHB6 TYK2-210ENST00000529370 3176 ntTSL 2 BASIC16.28■□□□□ 0.2
LIMA1Q9UHB6 SLC25A35-201ENST00000380067 2785 ntTSL 2 BASIC16.28■□□□□ 0.2
LIMA1Q9UHB6 TP73-205ENST00000378285 2117 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
LIMA1Q9UHB6 GOLGA2-212ENST00000609374 2973 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
LIMA1Q9UHB6 POLM-203ENST00000395831 2380 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
LIMA1Q9UHB6 EYA4-205ENST00000430974 2364 ntTSL 2 BASIC16.28■□□□□ 0.2
LIMA1Q9UHB6 ZNF674-AS1-201ENST00000421685 2078 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
LIMA1Q9UHB6 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LIMA1Q9UHB6 BRD1-205ENST00000457780 4997 ntTSL 5 BASIC16.28■□□□□ 0.2
LIMA1Q9UHB6 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
LIMA1Q9UHB6 CPN2-202ENST00000429275 2008 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
LIMA1Q9UHB6 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LIMA1Q9UHB6 HSD17B4-215ENST00000510025 2589 ntTSL 2 BASIC16.28■□□□□ 0.2
LIMA1Q9UHB6 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LIMA1Q9UHB6 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
LIMA1Q9UHB6 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC16.27■□□□□ 0.2
LIMA1Q9UHB6 HSD17B4-222ENST00000515320 2494 ntTSL 2 BASIC16.27■□□□□ 0.2
LIMA1Q9UHB6 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
LIMA1Q9UHB6 OR2V1-202ENST00000641318 2665 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
LIMA1Q9UHB6 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
LIMA1Q9UHB6 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC16.27■□□□□ 0.2
LIMA1Q9UHB6 HIST3H2BB-201ENST00000620438 2364 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
LIMA1Q9UHB6 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC16.27■□□□□ 0.2
LIMA1Q9UHB6 GLB1L2-205ENST00000535456 3365 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
LIMA1Q9UHB6 RNF183-206ENST00000478815 2312 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
LIMA1Q9UHB6 TTC28-AS1-212ENST00000433317 3080 ntTSL 5 BASIC16.27■□□□□ 0.2
LIMA1Q9UHB6 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
LIMA1Q9UHB6 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
LIMA1Q9UHB6 RAB2A-201ENST00000262646 3848 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
LIMA1Q9UHB6 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
LIMA1Q9UHB6 MYCLP2-201ENST00000449268 967 ntBASIC16.27■□□□□ 0.2
LIMA1Q9UHB6 GALT-202ENST00000450095 1280 ntTSL 2 BASIC16.27■□□□□ 0.2
LIMA1Q9UHB6 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC16.27■□□□□ 0.2
LIMA1Q9UHB6 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
LIMA1Q9UHB6 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC16.27■□□□□ 0.2
LIMA1Q9UHB6 FKBP5-203ENST00000539068 3827 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
LIMA1Q9UHB6 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC16.27■□□□□ 0.2
LIMA1Q9UHB6 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC16.27■□□□□ 0.2
LIMA1Q9UHB6 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC16.27■□□□□ 0.2
LIMA1Q9UHB6 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
LIMA1Q9UHB6 AC005498.2-205ENST00000593218 784 ntBASIC16.27■□□□□ 0.2
LIMA1Q9UHB6 TMEM261P1-201ENST00000604899 340 ntBASIC16.27■□□□□ 0.2
LIMA1Q9UHB6 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
LIMA1Q9UHB6 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
LIMA1Q9UHB6 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.19
LIMA1Q9UHB6 PRPH-201ENST00000257860 3245 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
LIMA1Q9UHB6 HPD-204ENST00000543163 1709 ntTSL 5 BASIC16.27■□□□□ 0.19
LIMA1Q9UHB6 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.19
LIMA1Q9UHB6 LANCL2-201ENST00000254770 4353 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
LIMA1Q9UHB6 BNIP3-201ENST00000368636 2861 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
LIMA1Q9UHB6 GPR68-203ENST00000531499 2859 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.19
LIMA1Q9UHB6 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
LIMA1Q9UHB6 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
LIMA1Q9UHB6 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC16.27■□□□□ 0.19
LIMA1Q9UHB6 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC16.27■□□□□ 0.19
LIMA1Q9UHB6 NFATC4-207ENST00000553469 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
LIMA1Q9UHB6 GAS2L2-202ENST00000604641 3014 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.19
LIMA1Q9UHB6 TATDN3-201ENST00000366973 2321 ntAPPRIS ALT1 TSL 1 (best) BASIC16.27■□□□□ 0.19
LIMA1Q9UHB6 CRMP1-205ENST00000512574 2764 ntTSL 2 BASIC16.26■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 55.9 ms