Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 PPP2R1A-205ENST00000462990 2730 ntTSL 2 BASIC9.23□□□□□ -0.93
LINC00643Q86TS7 PDZRN3-205ENST00000466780 2737 ntTSL 2 BASIC9.23□□□□□ -0.93
LINC00643Q86TS7 TG-201ENST00000220616 8450 ntAPPRIS P1 TSL 1 (best) BASIC9.23□□□□□ -0.93
LINC00643Q86TS7 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC9.23□□□□□ -0.93
LINC00643Q86TS7 AL353692.3-201ENST00000407031 1396 ntBASIC9.23□□□□□ -0.93
LINC00643Q86TS7 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC9.23□□□□□ -0.93
LINC00643Q86TS7 PSMD12-201ENST00000356126 4406 ntAPPRIS P1 TSL 1 (best) BASIC9.23□□□□□ -0.93
LINC00643Q86TS7 NT5C3AP1-202ENST00000441170 1663 ntBASIC9.23□□□□□ -0.93
LINC00643Q86TS7 SEPT10-202ENST00000397712 3071 ntTSL 1 (best) BASIC9.23□□□□□ -0.93
LINC00643Q86TS7 SLC44A4-203ENST00000375562 2505 ntTSL 2 BASIC9.23□□□□□ -0.93
LINC00643Q86TS7 LOXHD1-203ENST00000398686 1958 ntTSL 1 (best) BASIC9.23□□□□□ -0.93
LINC00643Q86TS7 TFDP2-215ENST00000489671 9857 ntAPPRIS ALT2 TSL 1 (best) BASIC9.23□□□□□ -0.93
LINC00643Q86TS7 NRXN1-233ENST00000630543 4500 ntTSL 5 BASIC9.23□□□□□ -0.93
LINC00643Q86TS7 MAP1A-201ENST00000300231 10258 ntAPPRIS P2 TSL 5 BASIC9.22□□□□□ -0.93
LINC00643Q86TS7 ATP2B2-202ENST00000360273 8962 ntTSL 5 BASIC9.22□□□□□ -0.93
LINC00643Q86TS7 PARP10-203ENST00000524918 3469 ntAPPRIS ALT2 TSL 5 BASIC9.22□□□□□ -0.93
LINC00643Q86TS7 CELF3-202ENST00000290585 2335 ntAPPRIS ALT2 TSL 1 (best) BASIC9.22□□□□□ -0.93
LINC00643Q86TS7 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC9.22□□□□□ -0.93
LINC00643Q86TS7 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC9.22□□□□□ -0.93
LINC00643Q86TS7 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC9.22□□□□□ -0.93
LINC00643Q86TS7 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC9.22□□□□□ -0.93
LINC00643Q86TS7 FBXL7-203ENST00000510662 1758 ntTSL 1 (best) BASIC9.22□□□□□ -0.93
LINC00643Q86TS7 MYO1G-201ENST00000258787 3267 ntAPPRIS P1 TSL 1 (best) BASIC9.22□□□□□ -0.93
LINC00643Q86TS7 BTBD3-203ENST00000399006 4826 ntAPPRIS ALT1 TSL 5 BASIC9.22□□□□□ -0.93
LINC00643Q86TS7 PLAT-201ENST00000220809 2706 ntAPPRIS P1 TSL 1 (best) BASIC9.22□□□□□ -0.93
LINC00643Q86TS7 LINC01588-203ENST00000529902 4279 ntTSL 2 BASIC9.22□□□□□ -0.93
LINC00643Q86TS7 WARS-203ENST00000358655 2466 ntTSL 2 BASIC9.22□□□□□ -0.93
LINC00643Q86TS7 BDNF-202ENST00000356660 4018 ntAPPRIS P1 TSL 1 (best) BASIC9.22□□□□□ -0.93
LINC00643Q86TS7 CYP2J2-201ENST00000371204 1896 ntAPPRIS P1 TSL 1 (best) BASIC9.22□□□□□ -0.93
LINC00643Q86TS7 FAM225B-201ENST00000423546 5629 ntTSL 1 (best) BASIC9.22□□□□□ -0.93
LINC00643Q86TS7 SMG6-203ENST00000536871 1865 ntTSL 2 BASIC9.22□□□□□ -0.93
LINC00643Q86TS7 AC005696.4-201ENST00000614400 3147 ntBASIC9.22□□□□□ -0.93
LINC00643Q86TS7 ACTN1-202ENST00000376839 2824 ntTSL 2 BASIC9.22□□□□□ -0.93
LINC00643Q86TS7 CABIN1-201ENST00000263119 7222 ntAPPRIS P3 TSL 1 (best) BASIC9.22□□□□□ -0.93
LINC00643Q86TS7 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC9.22□□□□□ -0.93
LINC00643Q86TS7 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC9.22□□□□□ -0.93
LINC00643Q86TS7 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC9.22□□□□□ -0.93
LINC00643Q86TS7 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC9.22□□□□□ -0.93
LINC00643Q86TS7 SLC25A1P2-201ENST00000430693 912 ntBASIC9.22□□□□□ -0.93
LINC00643Q86TS7 PMS2P1-201ENST00000431037 1228 ntBASIC9.22□□□□□ -0.93
LINC00643Q86TS7 FDX2-206ENST00000492239 773 ntTSL 2 BASIC9.22□□□□□ -0.93
LINC00643Q86TS7 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC9.22□□□□□ -0.93
LINC00643Q86TS7 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC9.22□□□□□ -0.93
LINC00643Q86TS7 BX088651.1-201ENST00000540551 451 ntBASIC9.22□□□□□ -0.93
LINC00643Q86TS7 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC9.22□□□□□ -0.93
LINC00643Q86TS7 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC9.22□□□□□ -0.93
LINC00643Q86TS7 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC9.22□□□□□ -0.93
LINC00643Q86TS7 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC9.22□□□□□ -0.93
LINC00643Q86TS7 MIR4321-201ENST00000592276 80 ntBASIC9.22□□□□□ -0.93
LINC00643Q86TS7 AL121672.3-201ENST00000608644 468 ntBASIC9.22□□□□□ -0.93
LINC00643Q86TS7 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC9.22□□□□□ -0.93
LINC00643Q86TS7 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC9.22□□□□□ -0.93
LINC00643Q86TS7 MPRIP-205ENST00000395811 10960 ntAPPRIS ALT1 TSL 1 (best) BASIC9.22□□□□□ -0.93
LINC00643Q86TS7 S1PR1-201ENST00000305352 2909 ntAPPRIS P1 TSL 1 (best) BASIC9.22□□□□□ -0.93
LINC00643Q86TS7 KIF17-202ENST00000375044 3572 ntTSL 1 (best) BASIC9.22□□□□□ -0.93
LINC00643Q86TS7 AL117190.1-201ENST00000637474 1985 ntTSL 5 BASIC9.22□□□□□ -0.93
LINC00643Q86TS7 DUSP4-202ENST00000240101 2959 ntTSL 1 (best) BASIC9.22□□□□□ -0.93
LINC00643Q86TS7 AL357673.2-201ENST00000623663 4969 ntTSL 5 BASIC9.22□□□□□ -0.93
LINC00643Q86TS7 SPATA2-201ENST00000289431 4022 ntAPPRIS P1 TSL 1 (best) BASIC9.22□□□□□ -0.93
LINC00643Q86TS7 TLK1-202ENST00000360843 5726 ntTSL 1 (best) BASIC9.22□□□□□ -0.93
LINC00643Q86TS7 AC068580.3-201ENST00000449248 2015 ntTSL 1 (best) BASIC9.22□□□□□ -0.93
LINC00643Q86TS7 COX7A2L-202ENST00000378669 3056 ntAPPRIS P1 TSL 2 BASIC9.22□□□□□ -0.93
LINC00643Q86TS7 RRBP1-203ENST00000377807 3792 ntAPPRIS P2 TSL 5 BASIC9.22□□□□□ -0.93
LINC00643Q86TS7 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC9.22□□□□□ -0.93
LINC00643Q86TS7 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC9.22□□□□□ -0.93
LINC00643Q86TS7 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC9.22□□□□□ -0.93
LINC00643Q86TS7 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC9.22□□□□□ -0.93
LINC00643Q86TS7 GALNT15-203ENST00000437509 2416 ntTSL 1 (best) BASIC9.22□□□□□ -0.93
LINC00643Q86TS7 CCDC148-201ENST00000283233 3122 ntTSL 1 (best) BASIC9.22□□□□□ -0.93
LINC00643Q86TS7 PLAT-202ENST00000352041 2516 ntTSL 1 (best) BASIC9.22□□□□□ -0.93
LINC00643Q86TS7 MFF-204ENST00000353339 2186 ntTSL 5 BASIC9.22□□□□□ -0.93
LINC00643Q86TS7 SMYD4-201ENST00000305513 4384 ntAPPRIS P1 TSL 1 (best) BASIC9.21□□□□□ -0.93
LINC00643Q86TS7 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC9.21□□□□□ -0.93
LINC00643Q86TS7 RIOK3-201ENST00000339486 4038 ntAPPRIS P2 TSL 1 (best) BASIC9.21□□□□□ -0.93
LINC00643Q86TS7 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC9.21□□□□□ -0.93
LINC00643Q86TS7 AL845472.1-202ENST00000624675 4080 ntBASIC9.21□□□□□ -0.93
LINC00643Q86TS7 EXOC5-202ENST00000413566 8513 ntTSL 5 BASIC9.21□□□□□ -0.93
LINC00643Q86TS7 GLT8D2-201ENST00000360814 1880 ntAPPRIS P1 TSL 1 (best) BASIC9.21□□□□□ -0.93
LINC00643Q86TS7 CLINT1-201ENST00000411809 3440 ntAPPRIS P3 TSL 1 (best) BASIC9.21□□□□□ -0.93
LINC00643Q86TS7 IL2RG-203ENST00000374202 1534 ntAPPRIS P1 TSL 1 (best) BASIC9.21□□□□□ -0.93
LINC00643Q86TS7 FN1-202ENST00000336916 8435 ntTSL 1 (best) BASIC9.21□□□□□ -0.93
LINC00643Q86TS7 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC9.21□□□□□ -0.93
LINC00643Q86TS7 MAGED1-201ENST00000326587 2747 ntAPPRIS P1 TSL 1 (best) BASIC9.21□□□□□ -0.93
LINC00643Q86TS7 TMEM199-201ENST00000292114 3148 ntAPPRIS P1 TSL 1 (best) BASIC9.21□□□□□ -0.93
LINC00643Q86TS7 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC9.21□□□□□ -0.93
LINC00643Q86TS7 AC084364.1-201ENST00000551967 1556 ntBASIC9.21□□□□□ -0.93
LINC00643Q86TS7 SMIM27-203ENST00000451672 2382 ntAPPRIS ALT2 BASIC9.21□□□□□ -0.93
LINC00643Q86TS7 MYLIP-201ENST00000349606 2796 ntTSL 1 (best) BASIC9.21□□□□□ -0.93
LINC00643Q86TS7 ANKRD36B-201ENST00000258459 5986 ntAPPRIS P1 TSL 5 BASIC9.21□□□□□ -0.93
LINC00643Q86TS7 DENND1C-201ENST00000381480 2816 ntAPPRIS P3 TSL 1 (best) BASIC9.21□□□□□ -0.93
LINC00643Q86TS7 PAX8-205ENST00000429538 4084 ntAPPRIS P1 TSL 1 (best) BASIC9.21□□□□□ -0.93
LINC00643Q86TS7 ANKZF1-203ENST00000410034 2486 ntAPPRIS P1 TSL 2 BASIC9.21□□□□□ -0.93
LINC00643Q86TS7 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC9.21□□□□□ -0.93
LINC00643Q86TS7 EPB42-203ENST00000540029 2098 ntTSL 2 BASIC9.21□□□□□ -0.93
LINC00643Q86TS7 WIPF1-204ENST00000392547 4587 ntAPPRIS P2 TSL 1 (best) BASIC9.21□□□□□ -0.93
LINC00643Q86TS7 ATG16L1-201ENST00000347464 2915 ntTSL 1 (best) BASIC9.21□□□□□ -0.93
LINC00643Q86TS7 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC9.21□□□□□ -0.93
LINC00643Q86TS7 GPR55-205ENST00000622008 2526 ntAPPRIS P1 TSL 1 (best) BASIC9.21□□□□□ -0.94
LINC00643Q86TS7 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC9.21□□□□□ -0.94
LINC00643Q86TS7 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC9.21□□□□□ -0.94
Retrieved 100 of 98,524 protein–RNA pairs in 74.5 ms