Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 IFITM1-202ENST00000408968 855 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
PRKDCP78527 AL133351.2-201ENST00000437718 484 ntTSL 2 BASIC10.34□□□□□ -0.75
PRKDCP78527 AC099343.1-201ENST00000513481 609 ntBASIC10.34□□□□□ -0.75
PRKDCP78527 AC007728.1-202ENST00000564510 787 ntTSL 3 BASIC10.34□□□□□ -0.75
PRKDCP78527 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
PRKDCP78527 DPEP2-202ENST00000393847 1697 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
PRKDCP78527 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
PRKDCP78527 TUBAL3-201ENST00000380419 1798 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
PRKDCP78527 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC10.33□□□□□ -0.75
PRKDCP78527 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
PRKDCP78527 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC10.33□□□□□ -0.76
PRKDCP78527 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
PRKDCP78527 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
PRKDCP78527 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC10.33□□□□□ -0.76
PRKDCP78527 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC10.33□□□□□ -0.76
PRKDCP78527 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
PRKDCP78527 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC10.33□□□□□ -0.76
PRKDCP78527 TPPP3-205ENST00000564104 1736 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
PRKDCP78527 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC10.33□□□□□ -0.76
PRKDCP78527 CMTM1-201ENST00000328020 981 ntAPPRIS ALT2 TSL 1 (best) BASIC10.33□□□□□ -0.76
PRKDCP78527 CMTM1-202ENST00000332695 624 ntAPPRIS ALT2 TSL 1 (best) BASIC10.33□□□□□ -0.76
PRKDCP78527 ZMAT5-201ENST00000344318 899 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
PRKDCP78527 CD8B-202ENST00000349455 849 ntTSL 1 (best) BASIC10.33□□□□□ -0.76
PRKDCP78527 OR2W3-201ENST00000360358 945 ntAPPRIS P1 BASIC10.33□□□□□ -0.76
PRKDCP78527 CMTM1-205ENST00000379500 1064 ntAPPRIS P4 TSL 1 (best) BASIC10.33□□□□□ -0.76
PRKDCP78527 RPSAP6-201ENST00000417882 882 ntBASIC10.33□□□□□ -0.76
PRKDCP78527 AC092903.1-201ENST00000466506 262 ntBASIC10.33□□□□□ -0.76
PRKDCP78527 CMTM1-209ENST00000528324 749 ntAPPRIS ALT2 TSL 1 (best) BASIC10.33□□□□□ -0.76
PRKDCP78527 CMTM1-217ENST00000533666 493 ntAPPRIS ALT2 TSL 1 (best) BASIC10.33□□□□□ -0.76
PRKDCP78527 NEMF-210ENST00000556672 590 ntTSL 2 BASIC10.33□□□□□ -0.76
PRKDCP78527 RN7SL202P-201ENST00000584410 262 ntBASIC10.33□□□□□ -0.76
PRKDCP78527 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC10.33□□□□□ -0.76
PRKDCP78527 GOLGA8K-202ENST00000512626 1894 ntAPPRIS P1 TSL 5 BASIC10.33□□□□□ -0.76
PRKDCP78527 GOLGA8T-202ENST00000569052 1896 ntAPPRIS P1 TSL 5 BASIC10.33□□□□□ -0.76
PRKDCP78527 DUS2-201ENST00000358896 1933 ntAPPRIS P1 TSL 2 BASIC10.33□□□□□ -0.76
PRKDCP78527 CAB39L-204ENST00000409130 1411 ntTSL 1 (best) BASIC10.33□□□□□ -0.76
PRKDCP78527 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC10.33□□□□□ -0.76
PRKDCP78527 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC10.33□□□□□ -0.76
PRKDCP78527 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC10.33□□□□□ -0.76
PRKDCP78527 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC10.33□□□□□ -0.76
PRKDCP78527 CSRP2-201ENST00000311083 943 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
PRKDCP78527 FAM163B-201ENST00000356873 1131 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
PRKDCP78527 CRCT1-201ENST00000368790 700 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
PRKDCP78527 SOD1-202ENST00000389995 865 ntTSL 3 BASIC10.33□□□□□ -0.76
PRKDCP78527 AC000078.1-201ENST00000420617 682 ntBASIC10.33□□□□□ -0.76
PRKDCP78527 AC010894.2-201ENST00000444196 561 ntTSL 3 BASIC10.33□□□□□ -0.76
PRKDCP78527 AC010285.2-201ENST00000510240 569 ntTSL 4 BASIC10.33□□□□□ -0.76
PRKDCP78527 AC233724.9-201ENST00000511694 407 ntBASIC10.33□□□□□ -0.76
PRKDCP78527 CCNL2P1-201ENST00000512846 969 ntBASIC10.33□□□□□ -0.76
PRKDCP78527 CSRP2-203ENST00000547435 632 ntTSL 2 BASIC10.33□□□□□ -0.76
PRKDCP78527 SCAMP5-216ENST00000568081 710 ntTSL 2 BASIC10.33□□□□□ -0.76
PRKDCP78527 CTSD-208ENST00000636843 1512 ntAPPRIS ALT2 TSL 5 BASIC10.33□□□□□ -0.76
PRKDCP78527 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
PRKDCP78527 AL359853.1-202ENST00000415218 544 ntTSL 2 BASIC10.33□□□□□ -0.76
PRKDCP78527 AL137244.1-201ENST00000422931 865 ntBASIC10.33□□□□□ -0.76
PRKDCP78527 ST13P19-201ENST00000442505 1124 ntBASIC10.33□□□□□ -0.76
PRKDCP78527 C10orf90-207ENST00000480379 1012 ntAPPRIS ALT2 TSL 2 BASIC10.33□□□□□ -0.76
PRKDCP78527 AC139100.2-201ENST00000616901 662 ntBASIC10.33□□□□□ -0.76
PRKDCP78527 AC012370.2-204ENST00000601940 1320 ntTSL 5 BASIC10.33□□□□□ -0.76
PRKDCP78527 MTHFR-217ENST00000641820 1569 ntBASIC10.33□□□□□ -0.76
PRKDCP78527 SHISA5-206ENST00000426002 1839 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
PRKDCP78527 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
PRKDCP78527 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC10.33□□□□□ -0.76
PRKDCP78527 NBPF3-205ENST00000454000 2133 ntAPPRIS ALT2 TSL 2 BASIC10.33□□□□□ -0.76
PRKDCP78527 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
PRKDCP78527 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
PRKDCP78527 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC10.33□□□□□ -0.76
PRKDCP78527 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC10.32□□□□□ -0.76
PRKDCP78527 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC10.32□□□□□ -0.76
PRKDCP78527 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC10.32□□□□□ -0.76
PRKDCP78527 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC10.32□□□□□ -0.76
PRKDCP78527 TSGA13-201ENST00000356588 1372 ntAPPRIS P2 TSL 1 (best) BASIC10.32□□□□□ -0.76
PRKDCP78527 NANOS3-201ENST00000339133 581 ntTSL 1 (best) BASIC10.32□□□□□ -0.76
PRKDCP78527 GH1-203ENST00000351388 685 ntTSL 2 BASIC10.32□□□□□ -0.76
PRKDCP78527 KDM5C-IT1-201ENST00000412242 755 ntTSL 5 BASIC10.32□□□□□ -0.76
PRKDCP78527 IGHVIII-5-2-201ENST00000522505 261 ntBASIC10.32□□□□□ -0.76
PRKDCP78527 AC004923.1-201ENST00000527543 776 ntTSL 5 BASIC10.32□□□□□ -0.76
PRKDCP78527 AL512356.1-201ENST00000548203 535 ntTSL 3 BASIC10.32□□□□□ -0.76
PRKDCP78527 AC010551.3-201ENST00000563772 463 ntTSL 5 BASIC10.32□□□□□ -0.76
PRKDCP78527 AC239600.1-201ENST00000603201 462 ntBASIC10.32□□□□□ -0.76
PRKDCP78527 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC10.32□□□□□ -0.76
PRKDCP78527 SARS-202ENST00000369923 1882 ntTSL 5 BASIC10.32□□□□□ -0.76
PRKDCP78527 AC092850.2-201ENST00000623821 2697 ntBASIC10.32□□□□□ -0.76
PRKDCP78527 CEBPZOS-203ENST00000397226 1499 ntAPPRIS P1 TSL 5 BASIC10.32□□□□□ -0.76
PRKDCP78527 FAM9B-201ENST00000327220 1340 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
PRKDCP78527 MAL-202ENST00000349807 705 ntTSL 1 (best) BASIC10.32□□□□□ -0.76
PRKDCP78527 ATRAID-202ENST00000405489 1059 ntTSL 1 (best) BASIC10.32□□□□□ -0.76
PRKDCP78527 AC112694.1-202ENST00000540985 943 ntBASIC10.32□□□□□ -0.76
PRKDCP78527 CSRP2-207ENST00000552330 910 ntTSL 3 BASIC10.32□□□□□ -0.76
PRKDCP78527 NDUFB10P1-201ENST00000567319 521 ntBASIC10.32□□□□□ -0.76
PRKDCP78527 PCP2-202ENST00000598935 457 ntAPPRIS ALT2 TSL 3 BASIC10.32□□□□□ -0.76
PRKDCP78527 KRTAP10-4-202ENST00000616689 597 ntAPPRIS ALT2 TSL 5 BASIC10.32□□□□□ -0.76
PRKDCP78527 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
PRKDCP78527 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
PRKDCP78527 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC10.32□□□□□ -0.76
PRKDCP78527 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC10.32□□□□□ -0.76
PRKDCP78527 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC10.32□□□□□ -0.76
PRKDCP78527 FDFT1-223ENST00000615631 2462 ntAPPRIS P1 TSL 5 BASIC10.32□□□□□ -0.76
PRKDCP78527 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC10.32□□□□□ -0.76
PRKDCP78527 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC10.32□□□□□ -0.76
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms