Protein–RNA interactions for Protein: P52948

NUP98, Nuclear pore complex protein Nup98-Nup96, humanhuman

Predictions only

Length 1,817 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98P52948 GMPR2-223ENST00000559836 1893 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
NUP98P52948 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
NUP98P52948 CCDC51-206ENST00000447018 1461 ntTSL 2 BASIC18.1■□□□□ 0.49
NUP98P52948 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
NUP98P52948 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
NUP98P52948 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC18.1■□□□□ 0.49
NUP98P52948 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
NUP98P52948 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
NUP98P52948 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
NUP98P52948 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC18.1■□□□□ 0.49
NUP98P52948 NBPF3-205ENST00000454000 2133 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
NUP98P52948 AC026904.3-201ENST00000636550 1530 ntTSL 5 BASIC18.1■□□□□ 0.49
NUP98P52948 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
NUP98P52948 AC012442.2-201ENST00000414784 425 ntTSL 2 BASIC18.09■□□□□ 0.49
NUP98P52948 LINC00028-201ENST00000435497 587 ntTSL 2 BASIC18.09■□□□□ 0.49
NUP98P52948 MFAP3-202ENST00000439768 1186 ntTSL 2 BASIC18.09■□□□□ 0.49
NUP98P52948 AC242426.4-201ENST00000606856 573 ntTSL 5 BASIC18.09■□□□□ 0.49
NUP98P52948 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
NUP98P52948 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
NUP98P52948 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
NUP98P52948 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
NUP98P52948 CCT8L1P-201ENST00000465400 1674 ntBASIC18.09■□□□□ 0.49
NUP98P52948 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
NUP98P52948 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC18.09■□□□□ 0.49
NUP98P52948 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
NUP98P52948 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC18.09■□□□□ 0.49
NUP98P52948 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
NUP98P52948 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
NUP98P52948 PYY2-201ENST00000315776 282 ntBASIC18.09■□□□□ 0.49
NUP98P52948 FAM163B-201ENST00000356873 1131 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
NUP98P52948 CNR1-201ENST00000362094 1252 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
NUP98P52948 PDCD5-202ENST00000379316 154 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
NUP98P52948 AL606748.1-201ENST00000423919 655 ntTSL 3 BASIC18.09■□□□□ 0.49
NUP98P52948 NSD2-209ENST00000436793 835 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
NUP98P52948 AP000911.2-201ENST00000534330 502 ntBASIC18.09■□□□□ 0.49
NUP98P52948 AL355916.2-201ENST00000556543 593 ntTSL 4 BASIC18.09■□□□□ 0.49
NUP98P52948 PDCD5-208ENST00000592786 468 ntTSL 3 BASIC18.09■□□□□ 0.49
NUP98P52948 UBL4B-201ENST00000334179 1478 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
NUP98P52948 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC18.09■□□□□ 0.49
NUP98P52948 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
NUP98P52948 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
NUP98P52948 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC18.09■□□□□ 0.49
NUP98P52948 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC18.08■□□□□ 0.49
NUP98P52948 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC18.08■□□□□ 0.49
NUP98P52948 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
NUP98P52948 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.49
NUP98P52948 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC18.08■□□□□ 0.49
NUP98P52948 AC126177.1-201ENST00000547829 2218 ntBASIC18.08■□□□□ 0.49
NUP98P52948 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC18.08■□□□□ 0.49
NUP98P52948 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
NUP98P52948 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
NUP98P52948 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
NUP98P52948 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
NUP98P52948 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC18.08■□□□□ 0.49
NUP98P52948 Metazoa_SRP.9-201ENST00000415635 283 ntBASIC18.08■□□□□ 0.48
NUP98P52948 AL592076.1-201ENST00000424448 303 ntBASIC18.08■□□□□ 0.48
NUP98P52948 ASGR2-203ENST00000446679 879 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
NUP98P52948 AL355803.1-201ENST00000455524 188 ntTSL 2 BASIC18.08■□□□□ 0.48
NUP98P52948 EMP2-203ENST00000536829 781 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
NUP98P52948 AC003982.2-201ENST00000536933 365 ntTSL 3 BASIC18.08■□□□□ 0.48
NUP98P52948 SPINT2-204ENST00000587090 1246 ntAPPRIS ALT2 TSL 3 BASIC18.08■□□□□ 0.48
NUP98P52948 SLC27A5-204ENST00000594786 643 ntTSL 2 BASIC18.08■□□□□ 0.48
NUP98P52948 AC009975.2-202ENST00000634539 854 ntTSL 5 BASIC18.08■□□□□ 0.48
NUP98P52948 AP001184.1-201ENST00000637936 376 ntBASIC18.08■□□□□ 0.48
NUP98P52948 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
NUP98P52948 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
NUP98P52948 PRIMPOL-211ENST00000515774 2007 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
NUP98P52948 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.48
NUP98P52948 AC010096.1-201ENST00000443897 1709 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
NUP98P52948 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
NUP98P52948 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
NUP98P52948 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC18.08■□□□□ 0.48
NUP98P52948 MYADML-201ENST00000474610 2147 ntBASIC18.08■□□□□ 0.48
NUP98P52948 RBP1-205ENST00000492918 1487 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
NUP98P52948 PMF1-202ENST00000368277 1068 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
NUP98P52948 SMIM29-202ENST00000394990 792 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
NUP98P52948 GUSBP10-201ENST00000417412 665 ntBASIC18.07■□□□□ 0.48
NUP98P52948 AL137058.1-201ENST00000418237 673 ntTSL 5 BASIC18.07■□□□□ 0.48
NUP98P52948 MPC1L-201ENST00000423387 571 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
NUP98P52948 IZUMO1R-202ENST00000440961 805 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
NUP98P52948 AC095040.1-201ENST00000513286 675 ntBASIC18.07■□□□□ 0.48
NUP98P52948 AC022447.6-201ENST00000515522 438 ntBASIC18.07■□□□□ 0.48
NUP98P52948 FAM60A-207ENST00000542983 738 ntTSL 4 BASIC18.07■□□□□ 0.48
NUP98P52948 AC079174.1-201ENST00000552486 312 ntTSL 3 BASIC18.07■□□□□ 0.48
NUP98P52948 LINC01500-204ENST00000556815 752 ntTSL 3 BASIC18.07■□□□□ 0.48
NUP98P52948 LINC02176-201ENST00000569104 598 ntTSL 4 BASIC18.07■□□□□ 0.48
NUP98P52948 MIR6756-201ENST00000616240 63 ntBASIC18.07■□□□□ 0.48
NUP98P52948 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
NUP98P52948 ZCCHC17-201ENST00000344147 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
NUP98P52948 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC18.07■□□□□ 0.48
NUP98P52948 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
NUP98P52948 GABRB2-205ENST00000517901 1779 ntTSL 5 BASIC18.07■□□□□ 0.48
NUP98P52948 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC18.07■□□□□ 0.48
NUP98P52948 AC082651.3-201ENST00000474667 1947 ntTSL 2 BASIC18.07■□□□□ 0.48
NUP98P52948 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
NUP98P52948 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
NUP98P52948 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
NUP98P52948 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
NUP98P52948 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
NUP98P52948 LIMS1-201ENST00000332345 1235 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 59 ms