Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
COL18A1P39060 SCAMP1-AS1-201ENST00000421004 1479 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
COL18A1P39060 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
COL18A1P39060 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC18.99■□□□□ 0.63
COL18A1P39060 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
COL18A1P39060 CALCB-203ENST00000533448 2097 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
COL18A1P39060 AL451105.2-201ENST00000413763 1234 ntTSL 5 BASIC18.99■□□□□ 0.63
COL18A1P39060 AL391832.2-203ENST00000423175 554 ntTSL 3 BASIC18.99■□□□□ 0.63
COL18A1P39060 AL353150.1-201ENST00000456944 583 ntTSL 2 BASIC18.99■□□□□ 0.63
COL18A1P39060 FAM86KP-201ENST00000509817 987 ntBASIC18.99■□□□□ 0.63
COL18A1P39060 C10orf113-201ENST00000529198 614 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
COL18A1P39060 AC090001.1-201ENST00000553194 467 ntTSL 3 BASIC18.99■□□□□ 0.63
COL18A1P39060 AP005264.5-201ENST00000590066 467 ntBASIC18.99■□□□□ 0.63
COL18A1P39060 OSMR-AS1-204ENST00000636516 850 ntTSL 5 BASIC18.99■□□□□ 0.63
COL18A1P39060 ZEB1-AS1-208ENST00000607166 2503 ntBASIC18.99■□□□□ 0.63
COL18A1P39060 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
COL18A1P39060 ACTN4-203ENST00000424234 1566 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
COL18A1P39060 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
COL18A1P39060 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
COL18A1P39060 AL109809.1-201ENST00000418979 1367 ntBASIC18.99■□□□□ 0.63
COL18A1P39060 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
COL18A1P39060 AGAP7P-201ENST00000582299 2062 ntBASIC18.99■□□□□ 0.63
COL18A1P39060 AGAP14-201ENST00000624701 2060 ntBASIC18.99■□□□□ 0.63
COL18A1P39060 CLN8-204ENST00000519254 1769 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
COL18A1P39060 HYOU1-218ENST00000614668 1569 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
COL18A1P39060 MED11-201ENST00000293777 833 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL18A1P39060 OTOS-201ENST00000319460 566 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
COL18A1P39060 CMTM1-201ENST00000328020 981 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL18A1P39060 CMTM1-202ENST00000332695 624 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL18A1P39060 AC106827.1-201ENST00000366454 431 ntBASIC18.98■□□□□ 0.63
COL18A1P39060 CMTM1-205ENST00000379500 1064 ntAPPRIS P4 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL18A1P39060 PUS10-202ENST00000398658 1227 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
COL18A1P39060 AP002856.2-201ENST00000416553 584 ntTSL 3 BASIC18.98■□□□□ 0.63
COL18A1P39060 PSMB8-AS1-204ENST00000429600 996 ntTSL 2 BASIC18.98■□□□□ 0.63
COL18A1P39060 TEX36-AS1-202ENST00000446081 749 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
COL18A1P39060 AC068057.1-201ENST00000453322 709 ntTSL 2 BASIC18.98■□□□□ 0.63
COL18A1P39060 SIX3-AS1-202ENST00000456467 557 ntTSL 2 BASIC18.98■□□□□ 0.63
COL18A1P39060 AADACL2-AS1-202ENST00000483843 628 ntTSL 5 BASIC18.98■□□□□ 0.63
COL18A1P39060 CMTM1-209ENST00000528324 749 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL18A1P39060 CMTM1-217ENST00000533666 493 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL18A1P39060 VENTXP3-201ENST00000546480 773 ntBASIC18.98■□□□□ 0.63
COL18A1P39060 MYL6-218ENST00000550697 901 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL18A1P39060 AC012174.1-201ENST00000562349 714 ntTSL 3 BASIC18.98■□□□□ 0.63
COL18A1P39060 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC18.98■□□□□ 0.63
COL18A1P39060 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL18A1P39060 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
COL18A1P39060 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC18.98■□□□□ 0.63
COL18A1P39060 NBAT1-201ENST00000566912 1940 ntTSL 2 BASIC18.98■□□□□ 0.63
COL18A1P39060 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC18.98■□□□□ 0.63
COL18A1P39060 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC18.98■□□□□ 0.63
COL18A1P39060 C7orf57-201ENST00000348904 2125 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL18A1P39060 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL18A1P39060 FBXO16-202ENST00000380254 1343 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL18A1P39060 LINC00115-201ENST00000473798 1317 ntBASIC18.98■□□□□ 0.63
COL18A1P39060 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL18A1P39060 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL18A1P39060 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC18.98■□□□□ 0.63
COL18A1P39060 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL18A1P39060 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL18A1P39060 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL18A1P39060 TMEM95-201ENST00000330767 1169 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL18A1P39060 CACNG7-202ENST00000391766 631 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
COL18A1P39060 XG-202ENST00000419513 979 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL18A1P39060 BPIFB5P-201ENST00000457066 1099 ntBASIC18.98■□□□□ 0.63
COL18A1P39060 ALG1L7P-201ENST00000502317 768 ntBASIC18.98■□□□□ 0.63
COL18A1P39060 HINT1-205ENST00000508488 703 ntTSL 2 BASIC18.98■□□□□ 0.63
COL18A1P39060 NMNAT3-213ENST00000512391 794 ntTSL 3 BASIC18.98■□□□□ 0.63
COL18A1P39060 AC026191.1-204ENST00000517846 608 ntTSL 3 BASIC18.98■□□□□ 0.63
COL18A1P39060 LOXL1-AS1-207ENST00000565689 735 ntTSL 3 BASIC18.98■□□□□ 0.63
COL18A1P39060 ACSM5-206ENST00000575584 1130 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
COL18A1P39060 AC006548.2-201ENST00000605217 529 ntBASIC18.98■□□□□ 0.63
COL18A1P39060 BLACE-202ENST00000616210 540 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
COL18A1P39060 CTSV-201ENST00000259470 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL18A1P39060 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL18A1P39060 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
COL18A1P39060 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC18.98■□□□□ 0.63
COL18A1P39060 SLC37A4-201ENST00000330775 2102 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
COL18A1P39060 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL18A1P39060 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
COL18A1P39060 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
COL18A1P39060 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL18A1P39060 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC18.97■□□□□ 0.63
COL18A1P39060 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL18A1P39060 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC18.97■□□□□ 0.63
COL18A1P39060 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
COL18A1P39060 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL18A1P39060 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC18.97■□□□□ 0.63
COL18A1P39060 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL18A1P39060 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL18A1P39060 BTNL8-203ENST00000400707 1512 ntTSL 2 BASIC18.97■□□□□ 0.63
COL18A1P39060 TPRKB-203ENST00000409716 816 ntTSL 5 BASIC18.97■□□□□ 0.63
COL18A1P39060 LINC01523-201ENST00000425385 450 ntTSL 2 BASIC18.97■□□□□ 0.63
COL18A1P39060 LINC00892-203ENST00000454385 686 ntTSL 3 BASIC18.97■□□□□ 0.63
COL18A1P39060 IMMP1L-202ENST00000526776 469 ntTSL 3 BASIC18.97■□□□□ 0.63
COL18A1P39060 CYB561A3-208ENST00000536915 1094 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
COL18A1P39060 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC18.97■□□□□ 0.63
COL18A1P39060 C12orf73-210ENST00000552940 685 ntTSL 2 BASIC18.97■□□□□ 0.63
COL18A1P39060 AC023968.2-201ENST00000560593 1049 ntBASIC18.97■□□□□ 0.63
COL18A1P39060 MCEMP1-202ENST00000597445 763 ntAPPRIS ALT2 TSL 3 BASIC18.97■□□□□ 0.63
COL18A1P39060 ANKRD36C-208ENST00000619511 737 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms