Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC13.72□□□□□ -0.21
MSX1P28360 TPI1-206ENST00000488464 791 ntTSL 5 BASIC13.72□□□□□ -0.21
MSX1P28360 MESTP3-201ENST00000503460 968 ntBASIC13.72□□□□□ -0.21
MSX1P28360 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC13.72□□□□□ -0.21
MSX1P28360 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
MSX1P28360 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC13.72□□□□□ -0.21
MSX1P28360 TBC1D16-205ENST00000572862 1141 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
MSX1P28360 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC13.72□□□□□ -0.21
MSX1P28360 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC13.72□□□□□ -0.21
MSX1P28360 MIR3615-201ENST00000581999 87 ntBASIC13.72□□□□□ -0.21
MSX1P28360 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC13.72□□□□□ -0.21
MSX1P28360 UBE2Q2P6-202ENST00000617217 443 ntTSL 5 BASIC13.72□□□□□ -0.21
MSX1P28360 ETV2-208ENST00000621247 941 ntTSL 5 BASIC13.72□□□□□ -0.21
MSX1P28360 AC244517.4-201ENST00000624549 580 ntTSL 4 BASIC13.72□□□□□ -0.21
MSX1P28360 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
MSX1P28360 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
MSX1P28360 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
MSX1P28360 AJ011931.1-201ENST00000618749 2492 ntBASIC13.72□□□□□ -0.21
MSX1P28360 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
MSX1P28360 PRICKLE1-201ENST00000345127 5902 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
MSX1P28360 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
MSX1P28360 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
MSX1P28360 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
MSX1P28360 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC13.72□□□□□ -0.21
MSX1P28360 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC13.72□□□□□ -0.21
MSX1P28360 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
MSX1P28360 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
MSX1P28360 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
MSX1P28360 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
MSX1P28360 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
MSX1P28360 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC13.72□□□□□ -0.21
MSX1P28360 AC023090.2-201ENST00000625182 2110 ntBASIC13.72□□□□□ -0.21
MSX1P28360 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC13.72□□□□□ -0.21
MSX1P28360 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
MSX1P28360 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC13.71□□□□□ -0.21
MSX1P28360 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
MSX1P28360 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
MSX1P28360 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC13.71□□□□□ -0.21
MSX1P28360 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC13.71□□□□□ -0.21
MSX1P28360 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
MSX1P28360 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
MSX1P28360 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
MSX1P28360 ARL10-201ENST00000310389 10845 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.21
MSX1P28360 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
MSX1P28360 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.21
MSX1P28360 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
MSX1P28360 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
MSX1P28360 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC13.71□□□□□ -0.21
MSX1P28360 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC13.71□□□□□ -0.21
MSX1P28360 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
MSX1P28360 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
MSX1P28360 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
MSX1P28360 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
MSX1P28360 CNN2P8-201ENST00000421872 913 ntBASIC13.71□□□□□ -0.21
MSX1P28360 AC007969.1-201ENST00000433675 447 ntBASIC13.71□□□□□ -0.21
MSX1P28360 H2AFV-206ENST00000437072 589 ntTSL 4 BASIC13.71□□□□□ -0.21
MSX1P28360 LYRM9-204ENST00000503642 432 ntTSL 3 BASIC13.71□□□□□ -0.21
MSX1P28360 FTLP10-202ENST00000505798 471 ntBASIC13.71□□□□□ -0.21
MSX1P28360 COA4-204ENST00000541455 1038 ntTSL 5 BASIC13.71□□□□□ -0.21
MSX1P28360 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC13.71□□□□□ -0.21
MSX1P28360 AC023310.1-201ENST00000554836 735 ntBASIC13.71□□□□□ -0.21
MSX1P28360 MIR3908-201ENST00000579798 126 ntBASIC13.71□□□□□ -0.21
MSX1P28360 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.21
MSX1P28360 AC091271.1-201ENST00000611877 1162 ntBASIC13.71□□□□□ -0.21
MSX1P28360 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.21
MSX1P28360 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC13.71□□□□□ -0.21
MSX1P28360 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
MSX1P28360 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
MSX1P28360 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
MSX1P28360 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC13.71□□□□□ -0.21
MSX1P28360 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC13.71□□□□□ -0.22
MSX1P28360 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC13.71□□□□□ -0.22
MSX1P28360 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
MSX1P28360 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.22
MSX1P28360 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
MSX1P28360 PDE4D-203ENST00000340635 8232 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
MSX1P28360 JARID2-201ENST00000341776 5755 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.22
MSX1P28360 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC13.71□□□□□ -0.22
MSX1P28360 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
MSX1P28360 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
MSX1P28360 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC13.71□□□□□ -0.22
MSX1P28360 TSPAN11-201ENST00000261177 5505 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
MSX1P28360 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
MSX1P28360 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
MSX1P28360 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
MSX1P28360 APC2-201ENST00000233607 10151 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
MSX1P28360 NHLH2-202ENST00000369506 7226 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
MSX1P28360 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC13.7□□□□□ -0.22
MSX1P28360 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC13.7□□□□□ -0.22
MSX1P28360 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
MSX1P28360 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
MSX1P28360 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
MSX1P28360 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
MSX1P28360 CALM1-216ENST00000626705 1341 ntTSL 5 BASIC13.7□□□□□ -0.22
MSX1P28360 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
MSX1P28360 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
MSX1P28360 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
MSX1P28360 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
MSX1P28360 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
MSX1P28360 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 53 ms