Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 C8orf49-201ENST00000525043 1968 ntBASIC12.72□□□□□ -0.37
USF1P22415 AC007787.1-201ENST00000588095 1583 ntBASIC12.72□□□□□ -0.37
USF1P22415 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
USF1P22415 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC12.72□□□□□ -0.37
USF1P22415 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
USF1P22415 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
USF1P22415 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC12.72□□□□□ -0.37
USF1P22415 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC12.72□□□□□ -0.37
USF1P22415 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC12.72□□□□□ -0.37
USF1P22415 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
USF1P22415 MYLK-203ENST00000359169 7585 ntAPPRIS P3 TSL 5 BASIC12.72□□□□□ -0.37
USF1P22415 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC12.72□□□□□ -0.37
USF1P22415 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
USF1P22415 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
USF1P22415 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC12.72□□□□□ -0.37
USF1P22415 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC12.72□□□□□ -0.37
USF1P22415 AC127383.1-201ENST00000444697 1800 ntBASIC12.72□□□□□ -0.37
USF1P22415 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC12.72□□□□□ -0.37
USF1P22415 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
USF1P22415 MLLT10-201ENST00000307729 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
USF1P22415 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
USF1P22415 GRIN2C-201ENST00000293190 4261 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.37
USF1P22415 KRT8P14-201ENST00000414254 1442 ntBASIC12.71□□□□□ -0.37
USF1P22415 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
USF1P22415 PLXNB1-204ENST00000456774 5859 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
USF1P22415 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC12.71□□□□□ -0.37
USF1P22415 AL023775.1-201ENST00000454907 1746 ntBASIC12.71□□□□□ -0.37
USF1P22415 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC12.71□□□□□ -0.37
USF1P22415 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
USF1P22415 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC12.71□□□□□ -0.37
USF1P22415 PLXNB3-209ENST00000538966 6377 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.37
USF1P22415 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
USF1P22415 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
USF1P22415 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
USF1P22415 AL158070.2-201ENST00000623713 1621 ntBASIC12.71□□□□□ -0.37
USF1P22415 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC12.71□□□□□ -0.37
USF1P22415 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC12.71□□□□□ -0.37
USF1P22415 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.37
USF1P22415 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
USF1P22415 TSPO-201ENST00000329563 955 ntAPPRIS P1 TSL 3 BASIC12.71□□□□□ -0.37
USF1P22415 C1orf159-201ENST00000379319 1097 ntAPPRIS P3 TSL 5 BASIC12.71□□□□□ -0.37
USF1P22415 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
USF1P22415 AL662890.1-201ENST00000396818 632 ntBASIC12.71□□□□□ -0.37
USF1P22415 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC12.71□□□□□ -0.37
USF1P22415 DMKN-204ENST00000408915 600 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
USF1P22415 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC12.71□□□□□ -0.37
USF1P22415 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC12.71□□□□□ -0.37
USF1P22415 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC12.71□□□□□ -0.37
USF1P22415 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
USF1P22415 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC12.71□□□□□ -0.37
USF1P22415 AL139420.1-201ENST00000439394 653 ntTSL 3 BASIC12.71□□□□□ -0.37
USF1P22415 BX284668.4-201ENST00000453917 508 ntBASIC12.71□□□□□ -0.37
USF1P22415 CDKN2AIP-205ENST00000510928 860 ntTSL 2 BASIC12.71□□□□□ -0.37
USF1P22415 AC126915.1-201ENST00000522847 1038 ntBASIC12.71□□□□□ -0.37
USF1P22415 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC12.71□□□□□ -0.37
USF1P22415 ACTG1P17-201ENST00000558391 1119 ntBASIC12.71□□□□□ -0.37
USF1P22415 NKG7-204ENST00000595217 816 ntTSL 2 BASIC12.71□□□□□ -0.37
USF1P22415 AC008537.4-201ENST00000595728 1103 ntTSL 5 BASIC12.71□□□□□ -0.37
USF1P22415 RPS5-209ENST00000601521 1203 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.37
USF1P22415 AL021578.1-201ENST00000613646 709 ntBASIC12.71□□□□□ -0.37
USF1P22415 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC12.71□□□□□ -0.37
USF1P22415 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC12.71□□□□□ -0.37
USF1P22415 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC12.71□□□□□ -0.37
USF1P22415 SAMD4A-213ENST00000631086 6677 ntTSL 5 BASIC12.71□□□□□ -0.37
USF1P22415 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
USF1P22415 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC12.71□□□□□ -0.37
USF1P22415 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC12.71□□□□□ -0.37
USF1P22415 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.37
USF1P22415 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
USF1P22415 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
USF1P22415 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
USF1P22415 AC138035.3-201ENST00000622706 2791 ntBASIC12.71□□□□□ -0.38
USF1P22415 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.38
USF1P22415 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
USF1P22415 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
USF1P22415 ABHD18-206ENST00000611882 1493 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
USF1P22415 SETD1A-201ENST00000262519 6451 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
USF1P22415 TOM1L2-214ENST00000581396 5595 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
USF1P22415 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC12.71□□□□□ -0.38
USF1P22415 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.38
USF1P22415 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
USF1P22415 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC12.71□□□□□ -0.38
USF1P22415 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
USF1P22415 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.38
USF1P22415 PIK3CG-201ENST00000359195 5377 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
USF1P22415 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC12.7□□□□□ -0.38
USF1P22415 ANKEF1-201ENST00000378380 5303 ntAPPRIS P1 TSL 2 BASIC12.7□□□□□ -0.38
USF1P22415 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
USF1P22415 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC12.7□□□□□ -0.38
USF1P22415 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
USF1P22415 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
USF1P22415 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
USF1P22415 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC12.7□□□□□ -0.38
USF1P22415 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
USF1P22415 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC12.7□□□□□ -0.38
USF1P22415 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
USF1P22415 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC12.7□□□□□ -0.38
USF1P22415 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC12.7□□□□□ -0.38
USF1P22415 SLIT3-206ENST00000519560 9706 ntAPPRIS P3 TSL 1 (best) BASIC12.7□□□□□ -0.38
USF1P22415 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 50.2 ms