Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 AL390778.2-201ENST00000420883 886 ntTSL 3 BASIC15.21■□□□□ 0.03
COL9A1P20849 NME6-208ENST00000435684 599 ntTSL 2 BASIC15.21■□□□□ 0.03
COL9A1P20849 AL358176.1-201ENST00000457477 357 ntTSL 5 BASIC15.21■□□□□ 0.03
COL9A1P20849 PTGER4P3-201ENST00000458150 252 ntBASIC15.21■□□□□ 0.03
COL9A1P20849 AC006529.1-201ENST00000459978 637 ntBASIC15.21■□□□□ 0.03
COL9A1P20849 IKBKB-223ENST00000522147 954 ntTSL 5 BASIC15.21■□□□□ 0.03
COL9A1P20849 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
COL9A1P20849 TPM1-220ENST00000559556 977 ntAPPRIS ALT1 TSL 2 BASIC15.21■□□□□ 0.03
COL9A1P20849 AC124068.2-201ENST00000569473 1109 ntBASIC15.21■□□□□ 0.03
COL9A1P20849 FBXO36P1-201ENST00000579006 471 ntBASIC15.21■□□□□ 0.03
COL9A1P20849 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
COL9A1P20849 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
COL9A1P20849 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
COL9A1P20849 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
COL9A1P20849 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
COL9A1P20849 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
COL9A1P20849 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
COL9A1P20849 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC15.21■□□□□ 0.03
COL9A1P20849 PHB-210ENST00000511832 1509 ntTSL 2 BASIC15.21■□□□□ 0.03
COL9A1P20849 SPAAR-203ENST00000636776 1538 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
COL9A1P20849 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.02
COL9A1P20849 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.02
COL9A1P20849 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.02
COL9A1P20849 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.02
COL9A1P20849 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
COL9A1P20849 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
COL9A1P20849 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
COL9A1P20849 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC15.2■□□□□ 0.02
COL9A1P20849 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC15.2■□□□□ 0.02
COL9A1P20849 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
COL9A1P20849 DEF8-219ENST00000567874 1554 ntTSL 2 BASIC15.2■□□□□ 0.02
COL9A1P20849 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC15.2■□□□□ 0.02
COL9A1P20849 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC15.2■□□□□ 0.02
COL9A1P20849 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC15.2■□□□□ 0.02
COL9A1P20849 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC15.2■□□□□ 0.02
COL9A1P20849 AC009093.2-202ENST00000620513 2079 ntBASIC15.2■□□□□ 0.02
COL9A1P20849 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
COL9A1P20849 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC15.2■□□□□ 0.02
COL9A1P20849 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
COL9A1P20849 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC15.2■□□□□ 0.02
COL9A1P20849 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
COL9A1P20849 KCNK9-201ENST00000303015 1245 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
COL9A1P20849 GTF3C6-201ENST00000329970 952 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
COL9A1P20849 PPDPF-202ENST00000370179 868 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
COL9A1P20849 HLA-DRB5-201ENST00000374975 1260 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
COL9A1P20849 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC15.2■□□□□ 0.02
COL9A1P20849 AL121949.3-201ENST00000406684 385 ntBASIC15.2■□□□□ 0.02
COL9A1P20849 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
COL9A1P20849 TXNL4B-203ENST00000426362 965 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
COL9A1P20849 MIR663AHG-201ENST00000427348 1213 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
COL9A1P20849 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
COL9A1P20849 AL356000.1-201ENST00000441073 1238 ntBASIC15.2■□□□□ 0.02
COL9A1P20849 CT45A11P-201ENST00000448043 1134 ntBASIC15.2■□□□□ 0.02
COL9A1P20849 AL162377.1-202ENST00000456688 1181 ntTSL 2 BASIC15.2■□□□□ 0.02
COL9A1P20849 SCARNA12-201ENST00000459155 270 ntBASIC15.2■□□□□ 0.02
COL9A1P20849 HLA-J-204ENST00000495278 958 ntBASIC15.2■□□□□ 0.02
COL9A1P20849 MRPL22P1-201ENST00000505398 616 ntBASIC15.2■□□□□ 0.02
COL9A1P20849 AL358472.3-201ENST00000608147 415 ntBASIC15.2■□□□□ 0.02
COL9A1P20849 CBR3-AS1-206ENST00000608632 659 ntTSL 5 BASIC15.2■□□□□ 0.02
COL9A1P20849 OSMR-AS1-204ENST00000636516 850 ntTSL 5 BASIC15.2■□□□□ 0.02
COL9A1P20849 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
COL9A1P20849 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
COL9A1P20849 OARD1-203ENST00000463088 1515 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
COL9A1P20849 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC15.2■□□□□ 0.02
COL9A1P20849 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC15.2■□□□□ 0.02
COL9A1P20849 AL513523.2-202ENST00000427283 2040 ntBASIC15.2■□□□□ 0.02
COL9A1P20849 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
COL9A1P20849 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
COL9A1P20849 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
COL9A1P20849 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
COL9A1P20849 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
COL9A1P20849 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
COL9A1P20849 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
COL9A1P20849 AL137783.1-201ENST00000623494 1896 ntBASIC15.2■□□□□ 0.02
COL9A1P20849 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
COL9A1P20849 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
COL9A1P20849 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
COL9A1P20849 AC109460.1-201ENST00000567209 1478 ntTSL 3 BASIC15.2■□□□□ 0.02
COL9A1P20849 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC15.2■□□□□ 0.02
COL9A1P20849 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
COL9A1P20849 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
COL9A1P20849 AL391005.1-201ENST00000623953 2435 ntBASIC15.19■□□□□ 0.02
COL9A1P20849 AL672207.1-201ENST00000328462 1570 ntBASIC15.19■□□□□ 0.02
COL9A1P20849 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
COL9A1P20849 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
COL9A1P20849 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
COL9A1P20849 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
COL9A1P20849 AC090616.6-203ENST00000579186 1945 ntBASIC15.19■□□□□ 0.02
COL9A1P20849 REXO1L4P-201ENST00000605109 1937 ntBASIC15.19■□□□□ 0.02
COL9A1P20849 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
COL9A1P20849 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC15.19■□□□□ 0.02
COL9A1P20849 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
COL9A1P20849 PES1-204ENST00000402284 2144 ntTSL 5 BASIC15.19■□□□□ 0.02
COL9A1P20849 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC15.19■□□□□ 0.02
COL9A1P20849 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
COL9A1P20849 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
COL9A1P20849 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
COL9A1P20849 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
COL9A1P20849 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC15.19■□□□□ 0.02
COL9A1P20849 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 71 ms