Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC14.99□□□□□ -0.01
VCANP13611 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
VCANP13611 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
VCANP13611 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC14.99□□□□□ -0.01
VCANP13611 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
VCANP13611 AC106785.2-201ENST00000564385 1319 ntBASIC14.99□□□□□ -0.01
VCANP13611 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
VCANP13611 AP2M1-207ENST00000439647 1950 ntAPPRIS ALT1 TSL 2 BASIC14.99□□□□□ -0.01
VCANP13611 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
VCANP13611 OR2V1-201ENST00000329365 948 ntAPPRIS P1 BASIC14.99□□□□□ -0.01
VCANP13611 AL591242.1-201ENST00000422284 343 ntTSL 2 BASIC14.99□□□□□ -0.01
VCANP13611 CYP4F29P-202ENST00000428301 1279 ntTSL 2 BASIC14.99□□□□□ -0.01
VCANP13611 AC012617.1-202ENST00000586488 509 ntTSL 2 BASIC14.99□□□□□ -0.01
VCANP13611 AC005274.1-201ENST00000623460 802 ntBASIC14.99□□□□□ -0.01
VCANP13611 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
VCANP13611 HTD2-205ENST00000477305 1531 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.01
VCANP13611 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC14.99□□□□□ -0.01
VCANP13611 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
VCANP13611 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC14.99□□□□□ -0.01
VCANP13611 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.01
VCANP13611 MRPL55-205ENST00000366731 1423 ntTSL 2 BASIC14.99□□□□□ -0.01
VCANP13611 AC019109.1-201ENST00000401725 1874 ntBASIC14.99□□□□□ -0.01
VCANP13611 CBR3-AS1-202ENST00000427491 741 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
VCANP13611 AC079325.1-201ENST00000430386 857 ntBASIC14.99□□□□□ -0.01
VCANP13611 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
VCANP13611 AC239600.1-201ENST00000603201 462 ntBASIC14.99□□□□□ -0.01
VCANP13611 CBR3-AS1-207ENST00000608641 777 ntTSL 5 BASIC14.99□□□□□ -0.01
VCANP13611 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC14.99□□□□□ -0.01
VCANP13611 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
VCANP13611 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
VCANP13611 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
VCANP13611 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
VCANP13611 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
VCANP13611 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
VCANP13611 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
VCANP13611 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
VCANP13611 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
VCANP13611 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC14.98□□□□□ -0.01
VCANP13611 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
VCANP13611 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC14.98□□□□□ -0.01
VCANP13611 PGR-210ENST00000619228 3038 ntTSL 5 BASIC14.98□□□□□ -0.01
VCANP13611 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
VCANP13611 HVCN1-203ENST00000439744 1215 ntTSL 2 BASIC14.98□□□□□ -0.01
VCANP13611 IGKV1D-43-201ENST00000468879 532 ntAPPRIS P1 BASIC14.98□□□□□ -0.01
VCANP13611 SULT1A3-206ENST00000563322 906 ntAPPRIS ALT1 TSL 1 (best) BASIC14.98□□□□□ -0.01
VCANP13611 SULT1A4-204ENST00000565290 906 ntAPPRIS ALT1 TSL 1 (best) BASIC14.98□□□□□ -0.01
VCANP13611 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
VCANP13611 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC14.98□□□□□ -0.01
VCANP13611 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC14.98□□□□□ -0.01
VCANP13611 PLEKHG6-202ENST00000304581 1424 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
VCANP13611 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC14.98□□□□□ -0.01
VCANP13611 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
VCANP13611 INPP5E-201ENST00000371712 3394 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
VCANP13611 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC14.98□□□□□ -0.01
VCANP13611 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC14.98□□□□□ -0.01
VCANP13611 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC14.98□□□□□ -0.01
VCANP13611 LINC00963-203ENST00000423918 1654 ntTSL 2 BASIC14.98□□□□□ -0.01
VCANP13611 PUF60-209ENST00000527197 1559 ntTSL 5 BASIC14.98□□□□□ -0.01
VCANP13611 LILRA2-203ENST00000391737 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
VCANP13611 CCNH-201ENST00000256897 1378 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
VCANP13611 OR2R1P-201ENST00000441404 914 ntBASIC14.98□□□□□ -0.01
VCANP13611 GOLGA6L16P-201ENST00000441780 1299 ntBASIC14.98□□□□□ -0.01
VCANP13611 RPS23-207ENST00000511844 530 ntTSL 2 BASIC14.98□□□□□ -0.01
VCANP13611 EXTL3-AS1-203ENST00000520023 780 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
VCANP13611 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC14.98□□□□□ -0.01
VCANP13611 AC131206.1-201ENST00000538078 1211 ntBASIC14.98□□□□□ -0.01
VCANP13611 AC104961.2-201ENST00000578129 663 ntTSL 2 BASIC14.98□□□□□ -0.01
VCANP13611 AL451165.2-201ENST00000606971 718 ntTSL 2 BASIC14.98□□□□□ -0.01
VCANP13611 AC021072.1-201ENST00000635789 835 ntAPPRIS P1 BASIC14.98□□□□□ -0.01
VCANP13611 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
VCANP13611 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
VCANP13611 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
VCANP13611 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
VCANP13611 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
VCANP13611 AK6-202ENST00000380822 1648 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
VCANP13611 G6PD-201ENST00000369620 1799 ntTSL 5 BASIC14.98□□□□□ -0.01
VCANP13611 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
VCANP13611 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
VCANP13611 CRCT1-201ENST00000368790 700 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
VCANP13611 WWC2-208ENST00000508747 1216 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
VCANP13611 SCGB1A1-202ENST00000534397 466 ntTSL 3 BASIC14.98□□□□□ -0.01
VCANP13611 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC14.98□□□□□ -0.01
VCANP13611 COQ4-204ENST00000608951 781 ntTSL 2 BASIC14.98□□□□□ -0.01
VCANP13611 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
VCANP13611 DPH2-202ENST00000396758 1738 ntTSL 3 BASIC14.97□□□□□ -0.01
VCANP13611 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC14.97□□□□□ -0.01
VCANP13611 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC14.97□□□□□ -0.01
VCANP13611 PLSCR1-214ENST00000487389 1443 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
VCANP13611 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
VCANP13611 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
VCANP13611 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC14.97□□□□□ -0.01
VCANP13611 KRTAP10-9-201ENST00000397911 1171 ntAPPRIS P2 BASIC14.97□□□□□ -0.01
VCANP13611 AP000640.1-201ENST00000525337 879 ntTSL 2 BASIC14.97□□□□□ -0.01
VCANP13611 AC009055.1-201ENST00000562656 781 ntTSL 3 BASIC14.97□□□□□ -0.01
VCANP13611 AC120498.7-201ENST00000562876 330 ntBASIC14.97□□□□□ -0.01
VCANP13611 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
VCANP13611 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC14.97□□□□□ -0.01
VCANP13611 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
VCANP13611 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC14.97□□□□□ -0.01
VCANP13611 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 66.7 ms