Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 AC092933.1-201ENST00000393644 945 ntBASIC14.54□□□□□ -0.08
LDLRP01130 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
LDLRP01130 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
LDLRP01130 AC004945.1-201ENST00000416738 983 ntBASIC14.54□□□□□ -0.08
LDLRP01130 BCYRN1-201ENST00000418539 200 ntBASIC14.54□□□□□ -0.08
LDLRP01130 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC14.54□□□□□ -0.08
LDLRP01130 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC14.54□□□□□ -0.08
LDLRP01130 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
LDLRP01130 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC14.54□□□□□ -0.08
LDLRP01130 RNA5SP410-201ENST00000516285 106 ntBASIC14.54□□□□□ -0.08
LDLRP01130 AC104989.1-201ENST00000519711 778 ntBASIC14.54□□□□□ -0.08
LDLRP01130 TPRX2P-201ENST00000535362 881 ntBASIC14.54□□□□□ -0.08
LDLRP01130 AC123567.1-201ENST00000548294 1261 ntBASIC14.54□□□□□ -0.08
LDLRP01130 BLOC1S1-205ENST00000551926 531 ntTSL 5 BASIC14.54□□□□□ -0.08
LDLRP01130 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC14.54□□□□□ -0.08
LDLRP01130 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC14.54□□□□□ -0.08
LDLRP01130 GPR182-203ENST00000622922 591 ntBASIC14.54□□□□□ -0.08
LDLRP01130 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
LDLRP01130 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
LDLRP01130 SLC2A13-201ENST00000280871 7003 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
LDLRP01130 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC14.54□□□□□ -0.08
LDLRP01130 CFLAR-206ENST00000395148 4415 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
LDLRP01130 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC14.54□□□□□ -0.08
LDLRP01130 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC14.54□□□□□ -0.08
LDLRP01130 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
LDLRP01130 SEMA4D-204ENST00000420101 1837 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
LDLRP01130 TMEM212-201ENST00000334567 1881 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
LDLRP01130 SMARCA2-214ENST00000450198 5602 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
LDLRP01130 ROCK1-201ENST00000399799 9484 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
LDLRP01130 MCRS1-211ENST00000550165 1936 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
LDLRP01130 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
LDLRP01130 CYP1A1-207ENST00000567032 2107 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
LDLRP01130 AC005252.3-201ENST00000623855 2258 ntBASIC14.54□□□□□ -0.08
LDLRP01130 KDELR2-201ENST00000258739 2884 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
LDLRP01130 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
LDLRP01130 ZNF618-201ENST00000288466 9109 ntAPPRIS P3 TSL 2 BASIC14.54□□□□□ -0.08
LDLRP01130 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
LDLRP01130 AC005523.2-201ENST00000601192 3568 ntTSL 4 BASIC14.54□□□□□ -0.08
LDLRP01130 TCAIM-201ENST00000342649 3687 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
LDLRP01130 DLGAP1-204ENST00000400149 5203 ntTSL 5 BASIC14.53□□□□□ -0.08
LDLRP01130 C4B-201ENST00000425700 5237 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
LDLRP01130 VSIR-201ENST00000394957 4689 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
LDLRP01130 CRCP-203ENST00000395326 3009 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
LDLRP01130 PPIL2-202ENST00000398831 2574 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
LDLRP01130 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC14.53□□□□□ -0.08
LDLRP01130 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
LDLRP01130 LINC00841-201ENST00000451929 2126 ntTSL 2 BASIC14.53□□□□□ -0.08
LDLRP01130 ANKEF1-201ENST00000378380 5303 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
LDLRP01130 AL359881.3-201ENST00000602640 1721 ntBASIC14.53□□□□□ -0.08
LDLRP01130 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
LDLRP01130 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC14.53□□□□□ -0.08
LDLRP01130 FGFR1-201ENST00000326324 3816 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
LDLRP01130 FGFR1-204ENST00000356207 3824 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
LDLRP01130 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
LDLRP01130 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC14.53□□□□□ -0.08
LDLRP01130 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC14.53□□□□□ -0.08
LDLRP01130 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC14.53□□□□□ -0.08
LDLRP01130 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC14.53□□□□□ -0.08
LDLRP01130 EEF1DP4-201ENST00000446006 880 ntBASIC14.53□□□□□ -0.08
LDLRP01130 SERBP1P3-201ENST00000459980 809 ntBASIC14.53□□□□□ -0.08
LDLRP01130 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
LDLRP01130 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC14.53□□□□□ -0.08
LDLRP01130 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC14.53□□□□□ -0.08
LDLRP01130 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC14.53□□□□□ -0.08
LDLRP01130 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC14.53□□□□□ -0.08
LDLRP01130 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC14.53□□□□□ -0.08
LDLRP01130 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC14.53□□□□□ -0.08
LDLRP01130 5S_rRNA.22-201ENST00000614916 106 ntBASIC14.53□□□□□ -0.08
LDLRP01130 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC14.53□□□□□ -0.08
LDLRP01130 SLC19A2-201ENST00000236137 3671 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
LDLRP01130 FAM120A-202ENST00000375389 3585 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
LDLRP01130 ACE-201ENST00000290863 2479 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
LDLRP01130 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
LDLRP01130 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
LDLRP01130 AP000845.1-201ENST00000581677 2131 ntBASIC14.53□□□□□ -0.08
LDLRP01130 LRRFIP1-204ENST00000392000 3365 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
LDLRP01130 ZNF541-203ENST00000391901 4580 ntAPPRIS P2 TSL 5 BASIC14.53□□□□□ -0.08
LDLRP01130 ATP6V0A4-201ENST00000310018 3135 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
LDLRP01130 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC14.52□□□□□ -0.08
LDLRP01130 ABCG1-205ENST00000398449 2998 ntAPPRIS ALT1 TSL 1 (best) BASIC14.52□□□□□ -0.08
LDLRP01130 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
LDLRP01130 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
LDLRP01130 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
LDLRP01130 AMT-224ENST00000635808 1610 ntTSL 5 BASIC14.52□□□□□ -0.08
LDLRP01130 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC14.52□□□□□ -0.08
LDLRP01130 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
LDLRP01130 CYP4F24P-201ENST00000586049 1580 ntBASIC14.52□□□□□ -0.08
LDLRP01130 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
LDLRP01130 AC009690.1-201ENST00000379915 4374 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.08
LDLRP01130 KBTBD4-202ENST00000430070 2372 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
LDLRP01130 LINC01250-201ENST00000457478 2344 ntTSL 2 BASIC14.52□□□□□ -0.08
LDLRP01130 FBXO41-201ENST00000295133 6928 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
LDLRP01130 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC14.52□□□□□ -0.08
LDLRP01130 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
LDLRP01130 SFXN3-202ENST00000393459 3098 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.08
LDLRP01130 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC14.52□□□□□ -0.09
LDLRP01130 ANKRD19P-201ENST00000338192 862 ntBASIC14.52□□□□□ -0.09
LDLRP01130 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.09
LDLRP01130 TP73-205ENST00000378285 2117 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
LDLRP01130 RBM39-205ENST00000397370 612 ntTSL 2 BASIC14.52□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms