Protein–RNA interactions for Protein: P00352

ALDH1A1, Retinal dehydrogenase 1, humanhuman

Predictions only

Length 501 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ALDH1A1P00352 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
ALDH1A1P00352 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
ALDH1A1P00352 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC16.71■□□□□ 0.27
ALDH1A1P00352 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
ALDH1A1P00352 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC16.71■□□□□ 0.27
ALDH1A1P00352 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
ALDH1A1P00352 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC16.71■□□□□ 0.27
ALDH1A1P00352 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC16.71■□□□□ 0.27
ALDH1A1P00352 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
ALDH1A1P00352 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC16.71■□□□□ 0.27
ALDH1A1P00352 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.27
ALDH1A1P00352 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC16.71■□□□□ 0.27
ALDH1A1P00352 LEMD1-205ENST00000367154 786 ntTSL 2 BASIC16.71■□□□□ 0.27
ALDH1A1P00352 XPNPEP2-201ENST00000371105 912 ntTSL 2 BASIC16.71■□□□□ 0.27
ALDH1A1P00352 CDKN2C-202ENST00000371761 1220 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
ALDH1A1P00352 HCG9-201ENST00000376800 663 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
ALDH1A1P00352 DIO1-203ENST00000388876 606 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
ALDH1A1P00352 IFNA4-201ENST00000421715 978 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
ALDH1A1P00352 ACYP2-204ENST00000422521 1115 ntTSL 5 BASIC16.71■□□□□ 0.27
ALDH1A1P00352 IGLV9-49-201ENST00000427632 409 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
ALDH1A1P00352 OST4-201ENST00000429985 559 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
ALDH1A1P00352 KCNK16-204ENST00000437525 981 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
ALDH1A1P00352 ST13P19-201ENST00000442505 1124 ntBASIC16.71■□□□□ 0.27
ALDH1A1P00352 FKBP1B-205ENST00000452109 953 ntTSL 3 BASIC16.71■□□□□ 0.27
ALDH1A1P00352 AL355376.1-201ENST00000456082 517 ntTSL 3 BASIC16.71■□□□□ 0.27
ALDH1A1P00352 DIO1-204ENST00000524406 626 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
ALDH1A1P00352 DIO1-213ENST00000532493 406 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
ALDH1A1P00352 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC16.71■□□□□ 0.27
ALDH1A1P00352 SRP14-204ENST00000558720 780 ntTSL 2 BASIC16.71■□□□□ 0.27
ALDH1A1P00352 USB1-205ENST00000561743 1135 ntTSL 3 BASIC16.71■□□□□ 0.27
ALDH1A1P00352 FAM192A-218ENST00000567439 1086 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
ALDH1A1P00352 C19orf70-203ENST00000587589 577 ntTSL 5 BASIC16.71■□□□□ 0.27
ALDH1A1P00352 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC16.71■□□□□ 0.27
ALDH1A1P00352 IQCJ-201ENST00000397832 1460 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
ALDH1A1P00352 GPSM3-209ENST00000487761 1460 ntTSL 5 BASIC16.71■□□□□ 0.27
ALDH1A1P00352 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC16.71■□□□□ 0.27
ALDH1A1P00352 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
ALDH1A1P00352 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
ALDH1A1P00352 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
ALDH1A1P00352 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
ALDH1A1P00352 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC16.71■□□□□ 0.27
ALDH1A1P00352 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
ALDH1A1P00352 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
ALDH1A1P00352 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC16.71■□□□□ 0.26
ALDH1A1P00352 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC16.71■□□□□ 0.26
ALDH1A1P00352 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
ALDH1A1P00352 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC16.71■□□□□ 0.26
ALDH1A1P00352 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.26
ALDH1A1P00352 NIFK-AS1-203ENST00000419902 1316 ntTSL 2 BASIC16.7■□□□□ 0.26
ALDH1A1P00352 ENPP7P8-202ENST00000527856 1345 ntBASIC16.7■□□□□ 0.26
ALDH1A1P00352 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
ALDH1A1P00352 PPM1L-201ENST00000295839 1449 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
ALDH1A1P00352 C20orf96-202ENST00000382369 1420 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
ALDH1A1P00352 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC16.7■□□□□ 0.26
ALDH1A1P00352 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC16.7■□□□□ 0.26
ALDH1A1P00352 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC16.7■□□□□ 0.26
ALDH1A1P00352 SLC35B2-206ENST00000615337 2014 ntTSL 4 BASIC16.7■□□□□ 0.26
ALDH1A1P00352 LTF-202ENST00000417439 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
ALDH1A1P00352 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
ALDH1A1P00352 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC16.7■□□□□ 0.26
ALDH1A1P00352 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
ALDH1A1P00352 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
ALDH1A1P00352 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
ALDH1A1P00352 KRT8P28-201ENST00000433288 1390 ntBASIC16.7■□□□□ 0.26
ALDH1A1P00352 DNMT3L-204ENST00000628202 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
ALDH1A1P00352 SUMO4-201ENST00000326669 1066 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
ALDH1A1P00352 NHP2P1-201ENST00000335274 462 ntBASIC16.7■□□□□ 0.26
ALDH1A1P00352 CUTA-203ENST00000374500 937 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
ALDH1A1P00352 AF274858.1-201ENST00000406288 372 ntBASIC16.7■□□□□ 0.26
ALDH1A1P00352 AC018814.1-201ENST00000418972 357 ntTSL 3 BASIC16.7■□□□□ 0.26
ALDH1A1P00352 AL451000.1-201ENST00000451300 1186 ntBASIC16.7■□□□□ 0.26
ALDH1A1P00352 CSAG1-204ENST00000452779 627 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
ALDH1A1P00352 LINC01056-201ENST00000455711 1234 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
ALDH1A1P00352 AC112487.1-201ENST00000498032 1097 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
ALDH1A1P00352 AC106047.2-201ENST00000511723 743 ntBASIC16.7■□□□□ 0.26
ALDH1A1P00352 ANAPC15-204ENST00000535234 848 ntAPPRIS P3 TSL 2 BASIC16.7■□□□□ 0.26
ALDH1A1P00352 AC090001.1-201ENST00000553194 467 ntTSL 3 BASIC16.7■□□□□ 0.26
ALDH1A1P00352 LINC01500-204ENST00000556815 752 ntTSL 3 BASIC16.7■□□□□ 0.26
ALDH1A1P00352 IGHV3OR15-7-201ENST00000558565 359 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
ALDH1A1P00352 ELP5-212ENST00000574255 671 ntTSL 2 BASIC16.7■□□□□ 0.26
ALDH1A1P00352 FTLP5-201ENST00000586853 534 ntBASIC16.7■□□□□ 0.26
ALDH1A1P00352 APOC4-202ENST00000592954 615 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
ALDH1A1P00352 LINC00969-294ENST00000627609 992 ntTSL 5 BASIC16.7■□□□□ 0.26
ALDH1A1P00352 AC079325.2-201ENST00000641710 606 ntAPPRIS P5 BASIC16.7■□□□□ 0.26
ALDH1A1P00352 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
ALDH1A1P00352 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
ALDH1A1P00352 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC16.7■□□□□ 0.26
ALDH1A1P00352 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
ALDH1A1P00352 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
ALDH1A1P00352 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
ALDH1A1P00352 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
ALDH1A1P00352 BSDC1-205ENST00000446293 1505 ntTSL 2 BASIC16.7■□□□□ 0.26
ALDH1A1P00352 AC005906.2-205ENST00000640862 1522 ntTSL 5 BASIC16.7■□□□□ 0.26
ALDH1A1P00352 CEP250-201ENST00000397524 1419 ntTSL 5 BASIC16.7■□□□□ 0.26
ALDH1A1P00352 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
ALDH1A1P00352 AC013726.1-201ENST00000563747 2285 ntBASIC16.7■□□□□ 0.26
ALDH1A1P00352 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
ALDH1A1P00352 MC5R-201ENST00000324750 1319 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
ALDH1A1P00352 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
ALDH1A1P00352 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 46.4 ms