Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.09
CLDN9O95484 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CLDN9O95484 MINDY2-203ENST00000559228 9238 ntAPPRIS P3 TSL 2 BASIC14.47□□□□□ -0.09
CLDN9O95484 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CLDN9O95484 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC14.47□□□□□ -0.09
CLDN9O95484 GDF11-201ENST00000257868 8657 ntAPPRIS P2 TSL 1 (best) BASIC14.47□□□□□ -0.09
CLDN9O95484 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
CLDN9O95484 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC14.46□□□□□ -0.09
CLDN9O95484 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
CLDN9O95484 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
CLDN9O95484 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC14.46□□□□□ -0.09
CLDN9O95484 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
CLDN9O95484 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
CLDN9O95484 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC14.46□□□□□ -0.09
CLDN9O95484 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
CLDN9O95484 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
CLDN9O95484 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC14.46□□□□□ -0.09
CLDN9O95484 MTMR6-201ENST00000381801 5659 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
CLDN9O95484 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
CLDN9O95484 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
CLDN9O95484 LINC01230-201ENST00000625222 3017 ntBASIC14.46□□□□□ -0.09
CLDN9O95484 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC14.46□□□□□ -0.09
CLDN9O95484 AL591623.1-201ENST00000417786 1960 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
CLDN9O95484 WARS2-202ENST00000369426 2811 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
CLDN9O95484 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
CLDN9O95484 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
CLDN9O95484 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
CLDN9O95484 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC14.46□□□□□ -0.09
CLDN9O95484 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
CLDN9O95484 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC14.46□□□□□ -0.09
CLDN9O95484 APOA1-205ENST00000375329 927 ntTSL 2 BASIC14.46□□□□□ -0.09
CLDN9O95484 SERF2-209ENST00000409646 559 ntTSL 4 BASIC14.46□□□□□ -0.09
CLDN9O95484 FO681548.1-201ENST00000455617 1132 ntBASIC14.46□□□□□ -0.09
CLDN9O95484 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
CLDN9O95484 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
CLDN9O95484 AC190387.1-201ENST00000551683 408 ntBASIC14.46□□□□□ -0.09
CLDN9O95484 MIR4745-201ENST00000577608 62 ntBASIC14.46□□□□□ -0.09
CLDN9O95484 AC092364.2-202ENST00000597012 1073 ntBASIC14.46□□□□□ -0.09
CLDN9O95484 ABBA01031660.1-201ENST00000635219 756 ntBASIC14.46□□□□□ -0.09
CLDN9O95484 AC104836.1-202ENST00000636805 6041 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
CLDN9O95484 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC14.46□□□□□ -0.09
CLDN9O95484 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
CLDN9O95484 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
CLDN9O95484 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC14.46□□□□□ -0.1
CLDN9O95484 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC14.46□□□□□ -0.1
CLDN9O95484 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
CLDN9O95484 PRKAG2-215ENST00000492843 2699 ntTSL 5 BASIC14.46□□□□□ -0.1
CLDN9O95484 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC14.46□□□□□ -0.1
CLDN9O95484 ABCA7-203ENST00000435683 6211 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.1
CLDN9O95484 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
CLDN9O95484 TEX13C-201ENST00000632600 5095 ntAPPRIS P1 BASIC14.46□□□□□ -0.1
CLDN9O95484 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.1
CLDN9O95484 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC14.46□□□□□ -0.1
CLDN9O95484 ADRB2-201ENST00000305988 3443 ntAPPRIS P1 BASIC14.46□□□□□ -0.1
CLDN9O95484 TAF8-203ENST00000372982 1805 ntTSL 2 BASIC14.45□□□□□ -0.1
CLDN9O95484 KRBOX4-202ENST00000344302 2774 ntAPPRIS ALT2 TSL 2 BASIC14.45□□□□□ -0.1
CLDN9O95484 FZD5-201ENST00000295417 6708 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CLDN9O95484 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CLDN9O95484 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
CLDN9O95484 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC14.45□□□□□ -0.1
CLDN9O95484 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CLDN9O95484 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC14.45□□□□□ -0.1
CLDN9O95484 HTR3A-206ENST00000506841 2221 ntTSL 2 BASIC14.45□□□□□ -0.1
CLDN9O95484 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CLDN9O95484 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CLDN9O95484 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC14.45□□□□□ -0.1
CLDN9O95484 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC14.45□□□□□ -0.1
CLDN9O95484 FLII-201ENST00000327031 4338 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CLDN9O95484 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CLDN9O95484 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC14.45□□□□□ -0.1
CLDN9O95484 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC14.45□□□□□ -0.1
CLDN9O95484 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
CLDN9O95484 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CLDN9O95484 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CLDN9O95484 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC14.45□□□□□ -0.1
CLDN9O95484 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC14.45□□□□□ -0.1
CLDN9O95484 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CLDN9O95484 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC14.45□□□□□ -0.1
CLDN9O95484 TERF1P3-201ENST00000505638 1227 ntBASIC14.45□□□□□ -0.1
CLDN9O95484 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC14.45□□□□□ -0.1
CLDN9O95484 WASH4P-201ENST00000564273 1246 ntBASIC14.45□□□□□ -0.1
CLDN9O95484 TP53TG3HP-202ENST00000569755 579 ntBASIC14.45□□□□□ -0.1
CLDN9O95484 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
CLDN9O95484 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
CLDN9O95484 KBTBD12-202ENST00000405109 5727 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
CLDN9O95484 RNF182-208ENST00000544682 3495 ntAPPRIS P1 TSL 4 BASIC14.45□□□□□ -0.1
CLDN9O95484 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC14.45□□□□□ -0.1
CLDN9O95484 USP36-201ENST00000312010 5234 ntAPPRIS P2 TSL 5 BASIC14.45□□□□□ -0.1
CLDN9O95484 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC14.45□□□□□ -0.1
CLDN9O95484 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC14.45□□□□□ -0.1
CLDN9O95484 AC092135.3-201ENST00000624151 1846 ntBASIC14.45□□□□□ -0.1
CLDN9O95484 SPOCK3-201ENST00000357154 2986 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
CLDN9O95484 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CLDN9O95484 KMT2E-202ENST00000311117 6874 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CLDN9O95484 CYP1A1-210ENST00000617691 2521 ntTSL 5 BASIC14.45□□□□□ -0.1
CLDN9O95484 SFMBT1-201ENST00000394752 4548 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CLDN9O95484 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CLDN9O95484 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
CLDN9O95484 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CLDN9O95484 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC14.45□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms