Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 SNPH-202ENST00000381873 4995 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
RNF40O75150 ATRN-202ENST00000446916 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
RNF40O75150 GAK-201ENST00000314167 4442 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
RNF40O75150 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC16.24■□□□□ 0.19
RNF40O75150 REXO1L6P-201ENST00000603433 1515 ntBASIC16.24■□□□□ 0.19
RNF40O75150 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
RNF40O75150 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC16.24■□□□□ 0.19
RNF40O75150 TSPAN18-207ENST00000520358 3316 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
RNF40O75150 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
RNF40O75150 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
RNF40O75150 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
RNF40O75150 AC011462.1-202ENST00000540732 1960 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
RNF40O75150 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC16.24■□□□□ 0.19
RNF40O75150 SNX14-203ENST00000369627 3111 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
RNF40O75150 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC16.24■□□□□ 0.19
RNF40O75150 FXYD6-207ENST00000527717 1799 ntAPPRIS P2 TSL 2 BASIC16.24■□□□□ 0.19
RNF40O75150 AGO3-201ENST00000246314 3211 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
RNF40O75150 CFAP52-202ENST00000396219 1912 ntTSL 2 BASIC16.24■□□□□ 0.19
RNF40O75150 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC16.24■□□□□ 0.19
RNF40O75150 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
RNF40O75150 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC16.24■□□□□ 0.19
RNF40O75150 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
RNF40O75150 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
RNF40O75150 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
RNF40O75150 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC16.24■□□□□ 0.19
RNF40O75150 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC16.24■□□□□ 0.19
RNF40O75150 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
RNF40O75150 ELP6-209ENST00000446787 894 ntTSL 3 BASIC16.24■□□□□ 0.19
RNF40O75150 BNIP3P42-201ENST00000454982 569 ntBASIC16.24■□□□□ 0.19
RNF40O75150 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC16.24■□□□□ 0.19
RNF40O75150 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC16.24■□□□□ 0.19
RNF40O75150 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC16.24■□□□□ 0.19
RNF40O75150 USP32P1-208ENST00000506594 1164 ntBASIC16.24■□□□□ 0.19
RNF40O75150 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC16.24■□□□□ 0.19
RNF40O75150 BNIP3P29-201ENST00000598302 571 ntBASIC16.24■□□□□ 0.19
RNF40O75150 AC011447.5-201ENST00000616168 564 ntBASIC16.24■□□□□ 0.19
RNF40O75150 RPSAP52-203ENST00000622976 1023 ntBASIC16.24■□□□□ 0.19
RNF40O75150 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
RNF40O75150 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
RNF40O75150 AC089987.1-201ENST00000551654 2209 ntBASIC16.24■□□□□ 0.19
RNF40O75150 TBC1D17-201ENST00000221543 2366 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
RNF40O75150 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
RNF40O75150 TBC1D17-209ENST00000622860 2370 ntTSL 5 BASIC16.24■□□□□ 0.19
RNF40O75150 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
RNF40O75150 TMEM184B-202ENST00000361906 3611 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
RNF40O75150 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
RNF40O75150 PRR34-201ENST00000396008 2817 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
RNF40O75150 AKNA-206ENST00000374088 5464 ntAPPRIS P2 TSL 2 BASIC16.24■□□□□ 0.19
RNF40O75150 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
RNF40O75150 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC16.24■□□□□ 0.19
RNF40O75150 APBA1-201ENST00000265381 6534 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
RNF40O75150 AC018665.1-201ENST00000622927 1362 ntBASIC16.24■□□□□ 0.19
RNF40O75150 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC16.24■□□□□ 0.19
RNF40O75150 SPRY2-201ENST00000377102 2708 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
RNF40O75150 TFR2-201ENST00000223051 2888 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
RNF40O75150 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
RNF40O75150 PXDNL-201ENST00000356297 4805 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
RNF40O75150 CNDP2-201ENST00000324262 5130 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
RNF40O75150 LMAN2L-201ENST00000264963 2397 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
RNF40O75150 DSN1-203ENST00000373750 2233 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
RNF40O75150 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
RNF40O75150 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC16.23■□□□□ 0.19
RNF40O75150 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC16.23■□□□□ 0.19
RNF40O75150 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC16.23■□□□□ 0.19
RNF40O75150 RGMA-202ENST00000425933 3078 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
RNF40O75150 GTF2I-212ENST00000573035 4548 ntAPPRIS P4 TSL 1 (best) BASIC16.23■□□□□ 0.19
RNF40O75150 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
RNF40O75150 OTULIN-201ENST00000284274 7800 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
RNF40O75150 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
RNF40O75150 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
RNF40O75150 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC16.23■□□□□ 0.19
RNF40O75150 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
RNF40O75150 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
RNF40O75150 HCG24-202ENST00000414398 717 ntTSL 3 BASIC16.23■□□□□ 0.19
RNF40O75150 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC16.23■□□□□ 0.19
RNF40O75150 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC16.23■□□□□ 0.19
RNF40O75150 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC16.23■□□□□ 0.19
RNF40O75150 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC16.23■□□□□ 0.19
RNF40O75150 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC16.23■□□□□ 0.19
RNF40O75150 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC16.23■□□□□ 0.19
RNF40O75150 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC16.23■□□□□ 0.19
RNF40O75150 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
RNF40O75150 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC16.23■□□□□ 0.19
RNF40O75150 LINC00226-202ENST00000618204 1052 ntTSL 2 BASIC16.23■□□□□ 0.19
RNF40O75150 AL158212.4-201ENST00000624062 1286 ntBASIC16.23■□□□□ 0.19
RNF40O75150 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
RNF40O75150 FUNDC2-201ENST00000369498 6455 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
RNF40O75150 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC16.23■□□□□ 0.19
RNF40O75150 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
RNF40O75150 KIF1C-201ENST00000320785 7919 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
RNF40O75150 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
RNF40O75150 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
RNF40O75150 MUTYH-210ENST00000450313 1929 ntTSL 5 BASIC16.23■□□□□ 0.19
RNF40O75150 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
RNF40O75150 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
RNF40O75150 BCAR1-205ENST00000420641 2725 ntAPPRIS ALT2 TSL 2 BASIC16.23■□□□□ 0.19
RNF40O75150 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
RNF40O75150 FUK-201ENST00000288078 4081 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
RNF40O75150 MEF2D-201ENST00000348159 5965 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
RNF40O75150 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC16.23■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 55.1 ms