Protein–RNA interactions for Protein: O43353

RIPK2, Receptor-interacting serine/threonine-protein kinase 2, humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RIPK2O43353 DEPTOR-201ENST00000286234 2569 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
RIPK2O43353 CLCNKA-202ENST00000375692 2581 ntAPPRIS ALT1 TSL 1 (best) BASIC15.19■□□□□ 0.02
RIPK2O43353 BRSK2-202ENST00000382179 3576 ntTSL 2 BASIC15.19■□□□□ 0.02
RIPK2O43353 AL138799.1-201ENST00000448213 1675 ntBASIC15.19■□□□□ 0.02
RIPK2O43353 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC15.18■□□□□ 0.02
RIPK2O43353 ZFHX2-205ENST00000615307 1972 ntTSL 2 BASIC15.18■□□□□ 0.02
RIPK2O43353 DRD5P1-201ENST00000456605 1438 ntBASIC15.18■□□□□ 0.02
RIPK2O43353 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC15.18■□□□□ 0.02
RIPK2O43353 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
RIPK2O43353 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
RIPK2O43353 HSPA8P5-201ENST00000456928 2069 ntBASIC15.18■□□□□ 0.02
RIPK2O43353 AC008429.1-202ENST00000518818 2067 ntTSL 2 BASIC15.18■□□□□ 0.02
RIPK2O43353 FOXM1-203ENST00000361953 3370 ntAPPRIS ALT1 TSL 1 (best) BASIC15.18■□□□□ 0.02
RIPK2O43353 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
RIPK2O43353 CDHR5-203ENST00000397542 3489 ntAPPRIS P4 TSL 1 (best) BASIC15.18■□□□□ 0.02
RIPK2O43353 CPXM2-201ENST00000241305 3554 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
RIPK2O43353 B3GNT4-202ENST00000535274 2938 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
RIPK2O43353 SNPH-202ENST00000381873 4995 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
RIPK2O43353 CETP-203ENST00000566128 1733 ntTSL 5 BASIC15.18■□□□□ 0.02
RIPK2O43353 RNF44-201ENST00000274811 4155 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
RIPK2O43353 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC15.18■□□□□ 0.02
RIPK2O43353 MAPRE2-201ENST00000300249 4265 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
RIPK2O43353 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
RIPK2O43353 CPN2-202ENST00000429275 2008 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
RIPK2O43353 ACSL1-201ENST00000281455 3832 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
RIPK2O43353 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
RIPK2O43353 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
RIPK2O43353 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC15.18■□□□□ 0.02
RIPK2O43353 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
RIPK2O43353 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
RIPK2O43353 MPV17-208ENST00000405076 603 ntTSL 5 BASIC15.18■□□□□ 0.02
RIPK2O43353 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
RIPK2O43353 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC15.18■□□□□ 0.02
RIPK2O43353 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC15.18■□□□□ 0.02
RIPK2O43353 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC15.18■□□□□ 0.02
RIPK2O43353 AC044860.1-202ENST00000559481 777 ntBASIC15.18■□□□□ 0.02
RIPK2O43353 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
RIPK2O43353 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC15.18■□□□□ 0.02
RIPK2O43353 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC15.18■□□□□ 0.02
RIPK2O43353 ACTR10-201ENST00000254286 2419 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
RIPK2O43353 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC15.18■□□□□ 0.02
RIPK2O43353 TGIF2-201ENST00000373872 3406 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
RIPK2O43353 GRB2-203ENST00000392562 3729 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
RIPK2O43353 PCTP-207ENST00000576183 2680 ntTSL 3 BASIC15.18■□□□□ 0.02
RIPK2O43353 GPR132-202ENST00000392585 2887 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
RIPK2O43353 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC15.18■□□□□ 0.02
RIPK2O43353 CD6-201ENST00000313421 3252 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
RIPK2O43353 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC15.17■□□□□ 0.02
RIPK2O43353 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC15.17■□□□□ 0.02
RIPK2O43353 SCUBE1-202ENST00000360835 9808 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
RIPK2O43353 PRKAB1-201ENST00000229328 2610 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
RIPK2O43353 ITSN1-212ENST00000399367 5722 ntAPPRIS ALT1 TSL 1 (best) BASIC15.17■□□□□ 0.02
RIPK2O43353 SUOX-208ENST00000548274 2352 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
RIPK2O43353 BEAN1-201ENST00000299694 2160 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
RIPK2O43353 AC068987.4-201ENST00000562343 2094 ntTSL 5 BASIC15.17■□□□□ 0.02
RIPK2O43353 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
RIPK2O43353 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
RIPK2O43353 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
RIPK2O43353 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
RIPK2O43353 MIR574-201ENST00000385209 96 ntBASIC15.17■□□□□ 0.02
RIPK2O43353 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
RIPK2O43353 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
RIPK2O43353 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC15.17■□□□□ 0.02
RIPK2O43353 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
RIPK2O43353 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
RIPK2O43353 Z82198.1-201ENST00000447396 437 ntTSL 3 BASIC15.17■□□□□ 0.02
RIPK2O43353 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC15.17■□□□□ 0.02
RIPK2O43353 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC15.17■□□□□ 0.02
RIPK2O43353 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC15.17■□□□□ 0.02
RIPK2O43353 BCAT2-203ENST00000545387 1272 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
RIPK2O43353 TIMM17BP1-201ENST00000545713 516 ntBASIC15.17■□□□□ 0.02
RIPK2O43353 DUX4L47-201ENST00000566374 394 ntBASIC15.17■□□□□ 0.02
RIPK2O43353 AC092337.1-201ENST00000568699 1129 ntBASIC15.17■□□□□ 0.02
RIPK2O43353 AL391069.4-201ENST00000609583 481 ntBASIC15.17■□□□□ 0.02
RIPK2O43353 MIR6074-201ENST00000612054 107 ntBASIC15.17■□□□□ 0.02
RIPK2O43353 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC15.17■□□□□ 0.02
RIPK2O43353 CHD1L-211ENST00000639534 1144 ntTSL 5 BASIC15.17■□□□□ 0.02
RIPK2O43353 TNK1-207ENST00000576812 3023 ntAPPRIS ALT1 TSL 1 (best) BASIC15.17■□□□□ 0.02
RIPK2O43353 CENPBD1-201ENST00000314994 2744 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
RIPK2O43353 AC020658.7-201ENST00000624274 2442 ntBASIC15.17■□□□□ 0.02
RIPK2O43353 LINC02396-202ENST00000550636 2324 ntTSL 2 BASIC15.17■□□□□ 0.02
RIPK2O43353 MROH1-207ENST00000528919 5234 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
RIPK2O43353 KIAA0895L-201ENST00000290881 3550 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
RIPK2O43353 MEAF6-203ENST00000373074 2005 ntTSL 2 BASIC15.17■□□□□ 0.02
RIPK2O43353 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC15.17■□□□□ 0.02
RIPK2O43353 ARFGAP1-212ENST00000519604 3191 ntTSL 2 BASIC15.17■□□□□ 0.02
RIPK2O43353 HELLS-202ENST00000348459 3099 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
RIPK2O43353 TMUB2-211ENST00000589184 1837 ntTSL 5 BASIC15.17■□□□□ 0.02
RIPK2O43353 SPPL3-201ENST00000353487 4148 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
RIPK2O43353 INO80-201ENST00000361937 6439 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
RIPK2O43353 MFSD2B-201ENST00000338315 2850 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
RIPK2O43353 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
RIPK2O43353 SNAP29-201ENST00000215730 4287 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
RIPK2O43353 AL356585.2-201ENST00000625078 2396 ntBASIC15.17■□□□□ 0.02
RIPK2O43353 MLLT10-201ENST00000307729 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
RIPK2O43353 FAM156A-221ENST00000622447 3757 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
RIPK2O43353 GRM7-203ENST00000389336 2901 ntAPPRIS ALT1 TSL 1 (best) BASIC15.16■□□□□ 0.02
RIPK2O43353 IGFBP5-201ENST00000233813 6215 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
RIPK2O43353 FERMT1-201ENST00000217289 5151 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
RIPK2O43353 MAGI3-202ENST00000369611 3596 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 138.7 ms