Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
HIF3AQ9Y2N7 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
HIF3AQ9Y2N7 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
HIF3AQ9Y2N7 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
HIF3AQ9Y2N7 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
HIF3AQ9Y2N7 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
HIF3AQ9Y2N7 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
HIF3AQ9Y2N7 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
HIF3AQ9Y2N7 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
HIF3AQ9Y2N7 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC13.53□□□□□ -0.24
HIF3AQ9Y2N7 EIF4G1-218ENST00000434061 5026 ntTSL 2 BASIC13.53□□□□□ -0.24
HIF3AQ9Y2N7 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC13.53□□□□□ -0.24
HIF3AQ9Y2N7 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
HIF3AQ9Y2N7 POU5F1-204ENST00000471529 1723 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
HIF3AQ9Y2N7 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
HIF3AQ9Y2N7 ADCY6-201ENST00000307885 6464 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
HIF3AQ9Y2N7 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
HIF3AQ9Y2N7 RSBN1-201ENST00000261441 6621 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
HIF3AQ9Y2N7 TAF8-203ENST00000372982 1805 ntTSL 2 BASIC13.53□□□□□ -0.24
HIF3AQ9Y2N7 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC13.52□□□□□ -0.24
HIF3AQ9Y2N7 AGGF1P1-201ENST00000509500 2073 ntBASIC13.52□□□□□ -0.24
HIF3AQ9Y2N7 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.24
HIF3AQ9Y2N7 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC13.52□□□□□ -0.24
HIF3AQ9Y2N7 UCKL1-AS1-201ENST00000623569 3602 ntBASIC13.52□□□□□ -0.24
HIF3AQ9Y2N7 IMPACT-201ENST00000284202 3792 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
HIF3AQ9Y2N7 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
HIF3AQ9Y2N7 TMTC1-207ENST00000552618 3915 ntTSL 5 BASIC13.52□□□□□ -0.24
HIF3AQ9Y2N7 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
HIF3AQ9Y2N7 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.24
HIF3AQ9Y2N7 ACE-201ENST00000290863 2479 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
HIF3AQ9Y2N7 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC13.52□□□□□ -0.24
HIF3AQ9Y2N7 KRBOX4-202ENST00000344302 2774 ntAPPRIS ALT2 TSL 2 BASIC13.52□□□□□ -0.24
HIF3AQ9Y2N7 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
HIF3AQ9Y2N7 IRAK3-201ENST00000261233 8663 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
HIF3AQ9Y2N7 COL22A1-201ENST00000303045 6346 ntAPPRIS P2 TSL 1 (best) BASIC13.52□□□□□ -0.25
HIF3AQ9Y2N7 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
HIF3AQ9Y2N7 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.25
HIF3AQ9Y2N7 ACKR1-201ENST00000368121 1240 ntBASIC13.52□□□□□ -0.25
HIF3AQ9Y2N7 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
HIF3AQ9Y2N7 ACTBP8-201ENST00000403258 1108 ntBASIC13.52□□□□□ -0.25
HIF3AQ9Y2N7 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC13.52□□□□□ -0.25
HIF3AQ9Y2N7 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
HIF3AQ9Y2N7 TLE1P1-201ENST00000422965 589 ntBASIC13.52□□□□□ -0.25
HIF3AQ9Y2N7 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.25
HIF3AQ9Y2N7 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC13.52□□□□□ -0.25
HIF3AQ9Y2N7 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.25
HIF3AQ9Y2N7 FAM207CP-201ENST00000443486 507 ntBASIC13.52□□□□□ -0.25
HIF3AQ9Y2N7 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
HIF3AQ9Y2N7 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC13.52□□□□□ -0.25
HIF3AQ9Y2N7 HNRNPA1P13-201ENST00000510646 963 ntBASIC13.52□□□□□ -0.25
HIF3AQ9Y2N7 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC13.52□□□□□ -0.25
HIF3AQ9Y2N7 ENPP7P5-201ENST00000541031 1031 ntBASIC13.52□□□□□ -0.25
HIF3AQ9Y2N7 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC13.52□□□□□ -0.25
HIF3AQ9Y2N7 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC13.52□□□□□ -0.25
HIF3AQ9Y2N7 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.25
HIF3AQ9Y2N7 AC005252.2-201ENST00000624630 1141 ntBASIC13.52□□□□□ -0.25
HIF3AQ9Y2N7 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.25
HIF3AQ9Y2N7 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
HIF3AQ9Y2N7 PPFIA3-203ENST00000602351 4341 ntTSL 5 BASIC13.52□□□□□ -0.25
HIF3AQ9Y2N7 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC13.52□□□□□ -0.25
HIF3AQ9Y2N7 AC007541.1-201ENST00000570282 1469 ntBASIC13.52□□□□□ -0.25
HIF3AQ9Y2N7 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC13.52□□□□□ -0.25
HIF3AQ9Y2N7 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
HIF3AQ9Y2N7 MVK-214ENST00000629016 1591 ntTSL 5 BASIC13.52□□□□□ -0.25
HIF3AQ9Y2N7 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.25
HIF3AQ9Y2N7 SLC6A20-202ENST00000358525 5423 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
HIF3AQ9Y2N7 DENND3-211ENST00000519811 5482 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.25
HIF3AQ9Y2N7 ITGB4-203ENST00000450894 5645 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
HIF3AQ9Y2N7 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC13.52□□□□□ -0.25
HIF3AQ9Y2N7 AL591623.1-201ENST00000417786 1960 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
HIF3AQ9Y2N7 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC13.52□□□□□ -0.25
HIF3AQ9Y2N7 CCT3-201ENST00000295688 2150 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
HIF3AQ9Y2N7 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
HIF3AQ9Y2N7 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.25
HIF3AQ9Y2N7 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC13.52□□□□□ -0.25
HIF3AQ9Y2N7 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
HIF3AQ9Y2N7 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.25
HIF3AQ9Y2N7 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
HIF3AQ9Y2N7 AC015656.1-201ENST00000624209 3578 ntBASIC13.52□□□□□ -0.25
HIF3AQ9Y2N7 SOCS5-202ENST00000394861 4058 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
HIF3AQ9Y2N7 GRAMD4-202ENST00000406902 4484 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
HIF3AQ9Y2N7 DKFZP434A062-201ENST00000573103 5021 ntBASIC13.52□□□□□ -0.25
HIF3AQ9Y2N7 ABCA7-202ENST00000433129 6704 ntAPPRIS P2 TSL 1 (best) BASIC13.52□□□□□ -0.25
HIF3AQ9Y2N7 GRM1-203ENST00000361719 6754 ntAPPRIS P3 TSL 5 BASIC13.52□□□□□ -0.25
HIF3AQ9Y2N7 AMOTL2-201ENST00000249883 4488 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
HIF3AQ9Y2N7 SRC-202ENST00000373558 4304 ntTSL 5 BASIC13.51□□□□□ -0.25
HIF3AQ9Y2N7 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC13.51□□□□□ -0.25
HIF3AQ9Y2N7 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC13.51□□□□□ -0.25
HIF3AQ9Y2N7 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
HIF3AQ9Y2N7 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC13.51□□□□□ -0.25
HIF3AQ9Y2N7 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
HIF3AQ9Y2N7 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC13.51□□□□□ -0.25
HIF3AQ9Y2N7 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
HIF3AQ9Y2N7 CCNB1-201ENST00000256442 2169 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
HIF3AQ9Y2N7 SPATA16-201ENST00000351008 2106 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
HIF3AQ9Y2N7 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
HIF3AQ9Y2N7 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC13.51□□□□□ -0.25
HIF3AQ9Y2N7 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
HIF3AQ9Y2N7 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
HIF3AQ9Y2N7 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 267.1 ms