Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TRAIPQ9BWF2 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TRAIPQ9BWF2 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
TRAIPQ9BWF2 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC16.37■□□□□ 0.21
TRAIPQ9BWF2 AL137783.1-201ENST00000623494 1896 ntBASIC16.37■□□□□ 0.21
TRAIPQ9BWF2 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
TRAIPQ9BWF2 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
TRAIPQ9BWF2 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC16.37■□□□□ 0.21
TRAIPQ9BWF2 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC16.37■□□□□ 0.21
TRAIPQ9BWF2 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC16.37■□□□□ 0.21
TRAIPQ9BWF2 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
TRAIPQ9BWF2 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
TRAIPQ9BWF2 SPN-201ENST00000360121 6894 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
TRAIPQ9BWF2 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC16.37■□□□□ 0.21
TRAIPQ9BWF2 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
TRAIPQ9BWF2 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
TRAIPQ9BWF2 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
TRAIPQ9BWF2 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
TRAIPQ9BWF2 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC16.37■□□□□ 0.21
TRAIPQ9BWF2 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
TRAIPQ9BWF2 SLURP2-201ENST00000317543 599 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
TRAIPQ9BWF2 TSPO-201ENST00000329563 955 ntAPPRIS P1 TSL 3 BASIC16.37■□□□□ 0.21
TRAIPQ9BWF2 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC16.37■□□□□ 0.21
TRAIPQ9BWF2 AL139420.1-201ENST00000439394 653 ntTSL 3 BASIC16.37■□□□□ 0.21
TRAIPQ9BWF2 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
TRAIPQ9BWF2 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC16.37■□□□□ 0.21
TRAIPQ9BWF2 CDC23-208ENST00000505120 455 ntTSL 3 BASIC16.37■□□□□ 0.21
TRAIPQ9BWF2 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC16.37■□□□□ 0.21
TRAIPQ9BWF2 TSPO-206ENST00000583777 636 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
TRAIPQ9BWF2 RPS15-202ENST00000585665 467 ntTSL 3 BASIC16.37■□□□□ 0.21
TRAIPQ9BWF2 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC16.37■□□□□ 0.21
TRAIPQ9BWF2 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
TRAIPQ9BWF2 AC007663.3-201ENST00000609632 465 ntBASIC16.37■□□□□ 0.21
TRAIPQ9BWF2 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC16.37■□□□□ 0.21
TRAIPQ9BWF2 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
TRAIPQ9BWF2 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
TRAIPQ9BWF2 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
TRAIPQ9BWF2 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
TRAIPQ9BWF2 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
TRAIPQ9BWF2 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
TRAIPQ9BWF2 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
TRAIPQ9BWF2 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC16.37■□□□□ 0.21
TRAIPQ9BWF2 RABEPK-201ENST00000259460 1313 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
TRAIPQ9BWF2 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
TRAIPQ9BWF2 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC16.37■□□□□ 0.21
TRAIPQ9BWF2 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC16.37■□□□□ 0.21
TRAIPQ9BWF2 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC16.37■□□□□ 0.21
TRAIPQ9BWF2 CMTM6-201ENST00000205636 3863 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
TRAIPQ9BWF2 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC16.37■□□□□ 0.21
TRAIPQ9BWF2 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
TRAIPQ9BWF2 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
TRAIPQ9BWF2 AC245123.1-202ENST00000612422 1719 ntTSL 5 BASIC16.36■□□□□ 0.21
TRAIPQ9BWF2 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC16.36■□□□□ 0.21
TRAIPQ9BWF2 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
TRAIPQ9BWF2 LHFPL2-207ENST00000515007 4680 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
TRAIPQ9BWF2 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
TRAIPQ9BWF2 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
TRAIPQ9BWF2 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC16.36■□□□□ 0.21
TRAIPQ9BWF2 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
TRAIPQ9BWF2 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
TRAIPQ9BWF2 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
TRAIPQ9BWF2 AL009178.2-201ENST00000597278 2719 ntBASIC16.36■□□□□ 0.21
TRAIPQ9BWF2 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC16.36■□□□□ 0.21
TRAIPQ9BWF2 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
TRAIPQ9BWF2 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
TRAIPQ9BWF2 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
TRAIPQ9BWF2 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
TRAIPQ9BWF2 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
TRAIPQ9BWF2 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC16.36■□□□□ 0.21
TRAIPQ9BWF2 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC16.36■□□□□ 0.21
TRAIPQ9BWF2 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
TRAIPQ9BWF2 FCGR1B-203ENST00000369384 1044 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
TRAIPQ9BWF2 NFYC-202ENST00000372651 1202 ntAPPRIS P3 TSL 5 BASIC16.36■□□□□ 0.21
TRAIPQ9BWF2 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
TRAIPQ9BWF2 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC16.36■□□□□ 0.21
TRAIPQ9BWF2 SEPT7P2-209ENST00000450436 601 ntTSL 4 BASIC16.36■□□□□ 0.21
TRAIPQ9BWF2 SERPINA13P-202ENST00000478994 924 ntBASIC16.36■□□□□ 0.21
TRAIPQ9BWF2 CNGA4-202ENST00000533426 936 ntTSL 2 BASIC16.36■□□□□ 0.21
TRAIPQ9BWF2 PPP1R32-205ENST00000538185 1107 ntTSL 2 BASIC16.36■□□□□ 0.21
TRAIPQ9BWF2 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC16.36■□□□□ 0.21
TRAIPQ9BWF2 AC243967.2-201ENST00000601409 567 ntTSL 4 BASIC16.36■□□□□ 0.21
TRAIPQ9BWF2 STPG3-204ENST00000611378 1015 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
TRAIPQ9BWF2 AL023803.2-201ENST00000620080 638 ntBASIC16.36■□□□□ 0.21
TRAIPQ9BWF2 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC16.36■□□□□ 0.21
TRAIPQ9BWF2 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
TRAIPQ9BWF2 STRN-202ENST00000379213 2254 ntTSL 5 BASIC16.36■□□□□ 0.21
TRAIPQ9BWF2 TGOLN2-204ENST00000409015 2276 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
TRAIPQ9BWF2 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
TRAIPQ9BWF2 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
TRAIPQ9BWF2 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC16.36■□□□□ 0.21
TRAIPQ9BWF2 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
TRAIPQ9BWF2 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
TRAIPQ9BWF2 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
TRAIPQ9BWF2 AGAP7P-201ENST00000582299 2062 ntBASIC16.36■□□□□ 0.21
TRAIPQ9BWF2 AGAP14-201ENST00000624701 2060 ntBASIC16.36■□□□□ 0.21
TRAIPQ9BWF2 GSN-215ENST00000545652 2428 ntTSL 2 BASIC16.36■□□□□ 0.21
TRAIPQ9BWF2 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC16.35■□□□□ 0.21
TRAIPQ9BWF2 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
TRAIPQ9BWF2 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
TRAIPQ9BWF2 AC106881.1-201ENST00000605849 3329 ntBASIC16.35■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms