Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 HELZ2-204ENST00000467148 8064 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
RNF4P78317 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC13.86□□□□□ -0.19
RNF4P78317 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
RNF4P78317 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
RNF4P78317 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
RNF4P78317 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
RNF4P78317 DMTN-201ENST00000265800 2554 ntTSL 5 BASIC13.85□□□□□ -0.19
RNF4P78317 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
RNF4P78317 DMTN-207ENST00000517305 2551 ntTSL 5 BASIC13.85□□□□□ -0.19
RNF4P78317 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
RNF4P78317 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC13.85□□□□□ -0.19
RNF4P78317 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
RNF4P78317 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC13.85□□□□□ -0.19
RNF4P78317 ARL10-201ENST00000310389 10845 ntAPPRIS P1 TSL 2 BASIC13.85□□□□□ -0.19
RNF4P78317 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
RNF4P78317 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
RNF4P78317 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC13.85□□□□□ -0.19
RNF4P78317 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC13.85□□□□□ -0.19
RNF4P78317 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
RNF4P78317 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC13.85□□□□□ -0.19
RNF4P78317 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC13.85□□□□□ -0.19
RNF4P78317 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
RNF4P78317 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
RNF4P78317 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.19
RNF4P78317 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
RNF4P78317 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC13.85□□□□□ -0.19
RNF4P78317 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
RNF4P78317 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
RNF4P78317 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC13.85□□□□□ -0.19
RNF4P78317 RPF1-202ENST00000370656 724 ntTSL 2 BASIC13.85□□□□□ -0.19
RNF4P78317 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
RNF4P78317 AL136309.1-201ENST00000403917 691 ntBASIC13.85□□□□□ -0.19
RNF4P78317 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC13.85□□□□□ -0.19
RNF4P78317 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC13.85□□□□□ -0.19
RNF4P78317 DRGX-202ENST00000434016 955 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
RNF4P78317 AL355994.2-201ENST00000447882 704 ntBASIC13.85□□□□□ -0.19
RNF4P78317 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
RNF4P78317 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
RNF4P78317 LYRM9-204ENST00000503642 432 ntTSL 3 BASIC13.85□□□□□ -0.19
RNF4P78317 AC000032.1-201ENST00000562538 491 ntTSL 2 BASIC13.85□□□□□ -0.19
RNF4P78317 AL354740.1-203ENST00000593917 424 ntTSL 3 BASIC13.85□□□□□ -0.19
RNF4P78317 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
RNF4P78317 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
RNF4P78317 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
RNF4P78317 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
RNF4P78317 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
RNF4P78317 GPI-205ENST00000586425 1799 ntTSL 5 BASIC13.85□□□□□ -0.19
RNF4P78317 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC13.85□□□□□ -0.19
RNF4P78317 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC13.85□□□□□ -0.19
RNF4P78317 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC13.85□□□□□ -0.19
RNF4P78317 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
RNF4P78317 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
RNF4P78317 B4GALNT3-201ENST00000266383 5068 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
RNF4P78317 TBCE-201ENST00000366601 1966 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
RNF4P78317 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC13.85□□□□□ -0.19
RNF4P78317 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
RNF4P78317 NR3C1-203ENST00000394464 6795 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
RNF4P78317 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
RNF4P78317 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC13.85□□□□□ -0.19
RNF4P78317 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC13.85□□□□□ -0.19
RNF4P78317 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
RNF4P78317 KIAA2026-201ENST00000381461 6884 ntTSL 5 BASIC13.85□□□□□ -0.19
RNF4P78317 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
RNF4P78317 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
RNF4P78317 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
RNF4P78317 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC13.84□□□□□ -0.19
RNF4P78317 UBE2G2-202ENST00000345496 3566 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
RNF4P78317 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
RNF4P78317 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
RNF4P78317 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC13.84□□□□□ -0.19
RNF4P78317 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
RNF4P78317 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
RNF4P78317 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC13.84□□□□□ -0.19
RNF4P78317 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC13.84□□□□□ -0.19
RNF4P78317 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
RNF4P78317 IPO8-201ENST00000256079 5325 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
RNF4P78317 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC13.84□□□□□ -0.19
RNF4P78317 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
RNF4P78317 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC13.84□□□□□ -0.19
RNF4P78317 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
RNF4P78317 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
RNF4P78317 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC13.84□□□□□ -0.19
RNF4P78317 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC13.84□□□□□ -0.19
RNF4P78317 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
RNF4P78317 KLK4-202ENST00000431178 481 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
RNF4P78317 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
RNF4P78317 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC13.84□□□□□ -0.19
RNF4P78317 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC13.84□□□□□ -0.19
RNF4P78317 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
RNF4P78317 RPL13AP20-201ENST00000459725 609 ntBASIC13.84□□□□□ -0.19
RNF4P78317 CDC23-208ENST00000505120 455 ntTSL 3 BASIC13.84□□□□□ -0.19
RNF4P78317 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
RNF4P78317 AL133153.2-201ENST00000557524 303 ntTSL 3 BASIC13.84□□□□□ -0.19
RNF4P78317 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC13.84□□□□□ -0.19
RNF4P78317 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC13.84□□□□□ -0.19
RNF4P78317 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC13.84□□□□□ -0.19
RNF4P78317 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC13.84□□□□□ -0.19
RNF4P78317 NOP9-201ENST00000267425 6033 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
RNF4P78317 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC13.84□□□□□ -0.19
RNF4P78317 LINC01101-201ENST00000622953 1884 ntBASIC13.84□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms