Protein–RNA interactions for Protein: P52948

NUP98, Nuclear pore complex protein Nup98-Nup96, humanhuman

Predictions only

Length 1,817 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98P52948 RTN4RL2-203ENST00000533205 637 ntTSL 3 BASIC18.12■□□□□ 0.49
NUP98P52948 AC135782.2-201ENST00000562040 472 ntTSL 3 BASIC18.12■□□□□ 0.49
NUP98P52948 AP005901.3-201ENST00000581666 415 ntTSL 3 BASIC18.12■□□□□ 0.49
NUP98P52948 AC010335.1-201ENST00000594590 599 ntTSL 3 BASIC18.12■□□□□ 0.49
NUP98P52948 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
NUP98P52948 MRM2-201ENST00000242257 1601 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
NUP98P52948 AL513327.1-206ENST00000587696 1432 ntTSL 5 BASIC18.12■□□□□ 0.49
NUP98P52948 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
NUP98P52948 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
NUP98P52948 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC18.12■□□□□ 0.49
NUP98P52948 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
NUP98P52948 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
NUP98P52948 ASB15-207ENST00000540573 1651 ntTSL 2 BASIC18.12■□□□□ 0.49
NUP98P52948 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
NUP98P52948 TAGLN3-201ENST00000273368 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
NUP98P52948 AC064801.2-201ENST00000625052 1303 ntBASIC18.12■□□□□ 0.49
NUP98P52948 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
NUP98P52948 BTNL8-211ENST00000610640 1488 ntTSL 5 BASIC18.12■□□□□ 0.49
NUP98P52948 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
NUP98P52948 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
NUP98P52948 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC18.12■□□□□ 0.49
NUP98P52948 PPP1R2P4-201ENST00000424051 595 ntBASIC18.12■□□□□ 0.49
NUP98P52948 AL356056.1-201ENST00000437899 369 ntTSL 5 BASIC18.12■□□□□ 0.49
NUP98P52948 KLF17P1-201ENST00000547105 1126 ntBASIC18.12■□□□□ 0.49
NUP98P52948 NACA-221ENST00000552540 1074 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
NUP98P52948 AC137723.1-201ENST00000584705 709 ntTSL 3 BASIC18.12■□□□□ 0.49
NUP98P52948 AL133467.4-201ENST00000602953 725 ntBASIC18.12■□□□□ 0.49
NUP98P52948 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
NUP98P52948 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC18.11■□□□□ 0.49
NUP98P52948 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
NUP98P52948 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
NUP98P52948 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
NUP98P52948 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
NUP98P52948 METTL7B-202ENST00000614691 1368 ntTSL 5 BASIC18.11■□□□□ 0.49
NUP98P52948 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
NUP98P52948 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC18.11■□□□□ 0.49
NUP98P52948 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
NUP98P52948 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
NUP98P52948 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
NUP98P52948 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
NUP98P52948 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
NUP98P52948 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC18.11■□□□□ 0.49
NUP98P52948 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC18.11■□□□□ 0.49
NUP98P52948 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
NUP98P52948 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
NUP98P52948 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC18.11■□□□□ 0.49
NUP98P52948 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
NUP98P52948 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC18.11■□□□□ 0.49
NUP98P52948 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
NUP98P52948 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
NUP98P52948 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
NUP98P52948 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
NUP98P52948 CALR3-201ENST00000269881 1292 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
NUP98P52948 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC18.11■□□□□ 0.49
NUP98P52948 NUPL2-202ENST00000410002 680 ntTSL 2 BASIC18.11■□□□□ 0.49
NUP98P52948 AC092638.2-201ENST00000441105 947 ntBASIC18.11■□□□□ 0.49
NUP98P52948 RGS5-216ENST00000449680 788 ntTSL 3 BASIC18.11■□□□□ 0.49
NUP98P52948 RPP40-203ENST00000464646 1042 ntTSL 5 BASIC18.11■□□□□ 0.49
NUP98P52948 SNCB-203ENST00000506696 552 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
NUP98P52948 AC051619.5-201ENST00000559003 736 ntTSL 2 BASIC18.11■□□□□ 0.49
NUP98P52948 ZNF530-203ENST00000597864 634 ntTSL 2 BASIC18.11■□□□□ 0.49
NUP98P52948 AL121956.4-201ENST00000629925 581 ntTSL 5 BASIC18.11■□□□□ 0.49
NUP98P52948 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
NUP98P52948 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
NUP98P52948 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC18.11■□□□□ 0.49
NUP98P52948 MINDY4B-201ENST00000465419 1383 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
NUP98P52948 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
NUP98P52948 FES-204ENST00000414248 2327 ntTSL 2 BASIC18.11■□□□□ 0.49
NUP98P52948 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC18.11■□□□□ 0.49
NUP98P52948 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
NUP98P52948 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
NUP98P52948 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
NUP98P52948 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
NUP98P52948 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
NUP98P52948 SARS2-202ENST00000430193 1886 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
NUP98P52948 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
NUP98P52948 SERHL-201ENST00000359906 1346 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
NUP98P52948 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
NUP98P52948 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC18.1■□□□□ 0.49
NUP98P52948 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
NUP98P52948 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
NUP98P52948 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
NUP98P52948 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC18.1■□□□□ 0.49
NUP98P52948 MRPL32-201ENST00000223324 1035 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
NUP98P52948 RN7SKP109-201ENST00000410592 316 ntBASIC18.1■□□□□ 0.49
NUP98P52948 DCAF7-201ENST00000415273 1220 ntTSL 2 BASIC18.1■□□□□ 0.49
NUP98P52948 AL390778.2-201ENST00000420883 886 ntTSL 3 BASIC18.1■□□□□ 0.49
NUP98P52948 AL354861.1-201ENST00000445213 355 ntBASIC18.1■□□□□ 0.49
NUP98P52948 TIMP1-205ENST00000456754 1095 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
NUP98P52948 AC073573.1-201ENST00000550908 481 ntTSL 3 BASIC18.1■□□□□ 0.49
NUP98P52948 MT3-203ENST00000565838 421 ntTSL 3 BASIC18.1■□□□□ 0.49
NUP98P52948 TMIGD2-204ENST00000600349 333 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
NUP98P52948 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
NUP98P52948 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
NUP98P52948 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
NUP98P52948 PCNA-202ENST00000379160 1359 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
NUP98P52948 GMPR2-204ENST00000420554 1864 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
NUP98P52948 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC18.1■□□□□ 0.49
NUP98P52948 ACP2-212ENST00000533929 1366 ntTSL 2 BASIC18.1■□□□□ 0.49
NUP98P52948 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC18.1■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 84.7 ms