Protein–RNA interactions for Protein: P51790

CLCN3, H(+)/Cl(-) exchange transporter 3, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3P51790 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC16.32■□□□□ 0.2
CLCN3P51790 RCAN1-212ENST00000492600 935 ntTSL 2 BASIC16.32■□□□□ 0.2
CLCN3P51790 MARK2P5-201ENST00000507649 634 ntBASIC16.32■□□□□ 0.2
CLCN3P51790 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC16.32■□□□□ 0.2
CLCN3P51790 SCARNA21-201ENST00000517026 139 ntBASIC16.32■□□□□ 0.2
CLCN3P51790 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
CLCN3P51790 AC136759.1-202ENST00000530858 2194 ntBASIC16.32■□□□□ 0.2
CLCN3P51790 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
CLCN3P51790 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC16.32■□□□□ 0.2
CLCN3P51790 AL160314.3-201ENST00000556041 767 ntBASIC16.32■□□□□ 0.2
CLCN3P51790 AL132642.1-201ENST00000557646 553 ntTSL 4 BASIC16.32■□□□□ 0.2
CLCN3P51790 AC104758.2-201ENST00000562716 483 ntTSL 3 BASIC16.32■□□□□ 0.2
CLCN3P51790 SYT17-208ENST00000568433 812 ntTSL 3 BASIC16.32■□□□□ 0.2
CLCN3P51790 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CLCN3P51790 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
CLCN3P51790 AC011447.3-201ENST00000590606 722 ntTSL 3 BASIC16.32■□□□□ 0.2
CLCN3P51790 TUBB4A-212ENST00000601152 590 ntTSL 4 BASIC16.32■□□□□ 0.2
CLCN3P51790 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC16.32■□□□□ 0.2
CLCN3P51790 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC16.32■□□□□ 0.2
CLCN3P51790 AP001505.2-201ENST00000616815 443 ntBASIC16.32■□□□□ 0.2
CLCN3P51790 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
CLCN3P51790 MBD3L2B-202ENST00000637800 774 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CLCN3P51790 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC16.32■□□□□ 0.2
CLCN3P51790 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC16.32■□□□□ 0.2
CLCN3P51790 AC138627.1-207ENST00000641560 1006 ntBASIC16.32■□□□□ 0.2
CLCN3P51790 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CLCN3P51790 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CLCN3P51790 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
CLCN3P51790 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CLCN3P51790 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC16.32■□□□□ 0.2
CLCN3P51790 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CLCN3P51790 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC16.32■□□□□ 0.2
CLCN3P51790 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC16.32■□□□□ 0.2
CLCN3P51790 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
CLCN3P51790 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CLCN3P51790 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
CLCN3P51790 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CLCN3P51790 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CLCN3P51790 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CLCN3P51790 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC16.31■□□□□ 0.2
CLCN3P51790 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CLCN3P51790 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CLCN3P51790 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CLCN3P51790 AMT-204ENST00000427987 1646 ntTSL 5 BASIC16.31■□□□□ 0.2
CLCN3P51790 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CLCN3P51790 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
CLCN3P51790 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CLCN3P51790 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CLCN3P51790 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC16.31■□□□□ 0.2
CLCN3P51790 ZNRD1ASP-217ENST00000437417 1497 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CLCN3P51790 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
CLCN3P51790 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC16.31■□□□□ 0.2
CLCN3P51790 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
CLCN3P51790 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CLCN3P51790 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CLCN3P51790 AC144831.1-201ENST00000573312 2656 ntBASIC16.31■□□□□ 0.2
CLCN3P51790 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CLCN3P51790 MAX-201ENST00000246163 897 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CLCN3P51790 IGLC7-201ENST00000390331 441 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
CLCN3P51790 KNCN-202ENST00000396314 608 ntAPPRIS P3 TSL 4 BASIC16.31■□□□□ 0.2
CLCN3P51790 AL662890.1-201ENST00000396818 632 ntBASIC16.31■□□□□ 0.2
CLCN3P51790 AC127070.2-201ENST00000424075 555 ntTSL 2 BASIC16.31■□□□□ 0.2
CLCN3P51790 LINC01352-201ENST00000431347 962 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CLCN3P51790 HLA-J-204ENST00000495278 958 ntBASIC16.31■□□□□ 0.2
CLCN3P51790 AL928654.3-201ENST00000552675 445 ntTSL 3 BASIC16.31■□□□□ 0.2
CLCN3P51790 ERH-203ENST00000557016 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CLCN3P51790 SNORD3B-2-202ENST00000571722 791 ntBASIC16.31■□□□□ 0.2
CLCN3P51790 LINC01233-203ENST00000601708 494 ntTSL 3 BASIC16.31■□□□□ 0.2
CLCN3P51790 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC16.31■□□□□ 0.2
CLCN3P51790 AJ011931.1-201ENST00000618749 2492 ntBASIC16.31■□□□□ 0.2
CLCN3P51790 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CLCN3P51790 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CLCN3P51790 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC16.31■□□□□ 0.2
CLCN3P51790 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CLCN3P51790 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC16.31■□□□□ 0.2
CLCN3P51790 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC16.31■□□□□ 0.2
CLCN3P51790 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CLCN3P51790 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CLCN3P51790 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CLCN3P51790 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CLCN3P51790 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
CLCN3P51790 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CLCN3P51790 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
CLCN3P51790 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC16.31■□□□□ 0.2
CLCN3P51790 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CLCN3P51790 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CLCN3P51790 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CLCN3P51790 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CLCN3P51790 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC16.3■□□□□ 0.2
CLCN3P51790 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CLCN3P51790 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CLCN3P51790 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC16.3■□□□□ 0.2
CLCN3P51790 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CLCN3P51790 MRPL37P1-201ENST00000592451 1337 ntBASIC16.3■□□□□ 0.2
CLCN3P51790 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
CLCN3P51790 RPL13A-201ENST00000391857 1181 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CLCN3P51790 IYD-204ENST00000392255 1180 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CLCN3P51790 SMARCE1-204ENST00000400122 1263 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CLCN3P51790 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CLCN3P51790 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms