Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 LINC01029-202ENST00000578833 366 ntTSL 3 BASIC17.5■□□□□ 0.39
BRCA1P38398 ZNF724-202ENST00000597037 780 ntTSL 2 BASIC17.5■□□□□ 0.39
BRCA1P38398 BX322534.1-201ENST00000635574 241 ntBASIC17.5■□□□□ 0.39
BRCA1P38398 AC215524.1-201ENST00000635696 241 ntBASIC17.5■□□□□ 0.39
BRCA1P38398 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC17.5■□□□□ 0.39
BRCA1P38398 AP005117.1-202ENST00000581724 1908 ntBASIC17.5■□□□□ 0.39
BRCA1P38398 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
BRCA1P38398 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
BRCA1P38398 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC17.5■□□□□ 0.39
BRCA1P38398 ORC6-201ENST00000219097 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
BRCA1P38398 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC17.5■□□□□ 0.39
BRCA1P38398 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
BRCA1P38398 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
BRCA1P38398 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
BRCA1P38398 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
BRCA1P38398 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC17.5■□□□□ 0.39
BRCA1P38398 CLEC20A-202ENST00000623247 1491 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
BRCA1P38398 LIPA-205ENST00000456827 2527 ntTSL 3 BASIC17.5■□□□□ 0.39
BRCA1P38398 RPS27L-203ENST00000439025 970 ntTSL 2 BASIC17.5■□□□□ 0.39
BRCA1P38398 FAM3D-AS1-201ENST00000464125 821 ntTSL 3 BASIC17.5■□□□□ 0.39
BRCA1P38398 AC087071.1-201ENST00000469264 427 ntTSL 2 BASIC17.5■□□□□ 0.39
BRCA1P38398 AC099548.2-201ENST00000491047 571 ntTSL 4 BASIC17.5■□□□□ 0.39
BRCA1P38398 AC008906.2-201ENST00000606656 474 ntTSL 2 BASIC17.5■□□□□ 0.39
BRCA1P38398 AC245369.7-201ENST00000631386 350 ntBASIC17.5■□□□□ 0.39
BRCA1P38398 AC009975.2-202ENST00000634539 854 ntTSL 5 BASIC17.5■□□□□ 0.39
BRCA1P38398 FBXL7-203ENST00000510662 1758 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
BRCA1P38398 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
BRCA1P38398 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC17.5■□□□□ 0.39
BRCA1P38398 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
BRCA1P38398 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC17.49■□□□□ 0.39
BRCA1P38398 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
BRCA1P38398 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
BRCA1P38398 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
BRCA1P38398 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC17.49■□□□□ 0.39
BRCA1P38398 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
BRCA1P38398 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
BRCA1P38398 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
BRCA1P38398 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
BRCA1P38398 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC17.49■□□□□ 0.39
BRCA1P38398 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC17.49■□□□□ 0.39
BRCA1P38398 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC17.49■□□□□ 0.39
BRCA1P38398 AC012593.1-214ENST00000586952 767 ntTSL 5 BASIC17.49■□□□□ 0.39
BRCA1P38398 TUBB6-214ENST00000592683 481 ntTSL 4 BASIC17.49■□□□□ 0.39
BRCA1P38398 ZNF671-203ENST00000596939 977 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
BRCA1P38398 AC090004.1-201ENST00000608606 653 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
BRCA1P38398 PHF23-213ENST00000613632 850 ntTSL 5 BASIC17.49■□□□□ 0.39
BRCA1P38398 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC17.49■□□□□ 0.39
BRCA1P38398 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
BRCA1P38398 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
BRCA1P38398 YIPF3-213ENST00000506469 1444 ntTSL 5 BASIC17.49■□□□□ 0.39
BRCA1P38398 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
BRCA1P38398 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
BRCA1P38398 RRAGA-201ENST00000380527 1589 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
BRCA1P38398 CAMP-201ENST00000296435 745 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
BRCA1P38398 SIRPB3P-201ENST00000340424 1216 ntBASIC17.48■□□□□ 0.39
BRCA1P38398 S100A13-203ENST00000392623 579 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
BRCA1P38398 TREX1-203ENST00000456089 629 ntTSL 3 BASIC17.48■□□□□ 0.39
BRCA1P38398 TMEM222-203ENST00000464813 1071 ntTSL 2 BASIC17.48■□□□□ 0.39
BRCA1P38398 AC112484.2-201ENST00000498297 1298 ntTSL 3 BASIC17.48■□□□□ 0.39
BRCA1P38398 EEF1GP8-201ENST00000506566 1154 ntBASIC17.48■□□□□ 0.39
BRCA1P38398 LINC01490-202ENST00000551399 1260 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
BRCA1P38398 MAX-218ENST00000557746 571 ntTSL 4 BASIC17.48■□□□□ 0.39
BRCA1P38398 RN7SL602P-201ENST00000578326 324 ntBASIC17.48■□□□□ 0.39
BRCA1P38398 RN7SL718P-201ENST00000581254 303 ntBASIC17.48■□□□□ 0.39
BRCA1P38398 AL645608.7-201ENST00000607769 351 ntTSL 4 BASIC17.48■□□□□ 0.39
BRCA1P38398 Metazoa_SRP.200-201ENST00000622073 282 ntBASIC17.48■□□□□ 0.39
BRCA1P38398 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
BRCA1P38398 NKILA-202ENST00000614771 2598 ntBASIC17.48■□□□□ 0.39
BRCA1P38398 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
BRCA1P38398 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
BRCA1P38398 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
BRCA1P38398 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC17.48■□□□□ 0.39
BRCA1P38398 TMEM9B-202ENST00000525069 1433 ntTSL 2 BASIC17.48■□□□□ 0.39
BRCA1P38398 BAX-201ENST00000293288 1358 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
BRCA1P38398 FGGY-203ENST00000371212 1640 ntTSL 2 BASIC17.48■□□□□ 0.39
BRCA1P38398 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
BRCA1P38398 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC17.48■□□□□ 0.39
BRCA1P38398 CALCB-203ENST00000533448 2097 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
BRCA1P38398 METTL6-202ENST00000383790 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
BRCA1P38398 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
BRCA1P38398 CICP23-201ENST00000605013 2741 ntBASIC17.48■□□□□ 0.39
BRCA1P38398 CNBP-205ENST00000500450 1516 ntTSL 2 BASIC17.48■□□□□ 0.39
BRCA1P38398 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
BRCA1P38398 IFITM1-201ENST00000328221 844 ntAPPRIS P1 TSL 3 BASIC17.48■□□□□ 0.39
BRCA1P38398 MORN2-201ENST00000340556 741 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
BRCA1P38398 OLA1P2-201ENST00000395519 1264 ntBASIC17.48■□□□□ 0.39
BRCA1P38398 IFITM1-202ENST00000408968 855 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
BRCA1P38398 HNRNPA1P25-201ENST00000422644 937 ntBASIC17.48■□□□□ 0.39
BRCA1P38398 RN7SL846P-201ENST00000467429 292 ntBASIC17.48■□□□□ 0.39
BRCA1P38398 HNRNPA3P6-201ENST00000472163 1006 ntBASIC17.48■□□□□ 0.39
BRCA1P38398 AC004801.1-201ENST00000549557 360 ntBASIC17.48■□□□□ 0.39
BRCA1P38398 AC011921.1-201ENST00000559739 557 ntTSL 4 BASIC17.48■□□□□ 0.39
BRCA1P38398 AC004231.3-201ENST00000579136 258 ntTSL 3 BASIC17.48■□□□□ 0.39
BRCA1P38398 AC126755.5-201ENST00000622756 267 ntBASIC17.48■□□□□ 0.39
BRCA1P38398 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
BRCA1P38398 C18orf15-201ENST00000623680 2534 ntBASIC17.47■□□□□ 0.39
BRCA1P38398 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
BRCA1P38398 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
BRCA1P38398 CHI3L1-201ENST00000255409 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
BRCA1P38398 ATP5A1-215ENST00000590665 1793 ntTSL 2 BASIC17.47■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms