Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CIITAP33076 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CIITAP33076 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC16.73■□□□□ 0.27
CIITAP33076 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
CIITAP33076 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC16.73■□□□□ 0.27
CIITAP33076 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
CIITAP33076 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
CIITAP33076 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
CIITAP33076 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CIITAP33076 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC16.73■□□□□ 0.27
CIITAP33076 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC16.73■□□□□ 0.27
CIITAP33076 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CIITAP33076 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC16.73■□□□□ 0.27
CIITAP33076 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CIITAP33076 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CIITAP33076 CALCA-201ENST00000331587 843 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CIITAP33076 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CIITAP33076 KRTAP10-13P-201ENST00000412914 571 ntBASIC16.73■□□□□ 0.27
CIITAP33076 AL450469.2-201ENST00000427132 499 ntTSL 3 BASIC16.73■□□□□ 0.27
CIITAP33076 PTPA-215ENST00000432124 567 ntTSL 4 BASIC16.73■□□□□ 0.27
CIITAP33076 FAM58BP-201ENST00000439056 645 ntBASIC16.73■□□□□ 0.27
CIITAP33076 PPP1R32-205ENST00000538185 1107 ntTSL 2 BASIC16.73■□□□□ 0.27
CIITAP33076 USB1-203ENST00000539737 1212 ntTSL 2 BASIC16.73■□□□□ 0.27
CIITAP33076 AC120498.1-201ENST00000563593 476 ntTSL 4 BASIC16.73■□□□□ 0.27
CIITAP33076 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC16.73■□□□□ 0.27
CIITAP33076 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC16.73■□□□□ 0.27
CIITAP33076 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
CIITAP33076 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC16.73■□□□□ 0.27
CIITAP33076 AC234782.2-201ENST00000614615 1240 ntTSL 2 BASIC16.73■□□□□ 0.27
CIITAP33076 AL023803.2-201ENST00000620080 638 ntBASIC16.73■□□□□ 0.27
CIITAP33076 AC022748.3-201ENST00000621828 275 ntBASIC16.73■□□□□ 0.27
CIITAP33076 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CIITAP33076 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CIITAP33076 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CIITAP33076 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC16.73■□□□□ 0.27
CIITAP33076 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CIITAP33076 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CIITAP33076 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC16.73■□□□□ 0.27
CIITAP33076 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CIITAP33076 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
CIITAP33076 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC16.73■□□□□ 0.27
CIITAP33076 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CIITAP33076 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CIITAP33076 RCHY1-202ENST00000380840 1735 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CIITAP33076 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CIITAP33076 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CIITAP33076 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC16.73■□□□□ 0.27
CIITAP33076 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC16.73■□□□□ 0.27
CIITAP33076 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CIITAP33076 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC16.72■□□□□ 0.27
CIITAP33076 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CIITAP33076 AC244394.1-201ENST00000435000 1665 ntBASIC16.72■□□□□ 0.27
CIITAP33076 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CIITAP33076 KHSRPP1-201ENST00000427983 1768 ntBASIC16.72■□□□□ 0.27
CIITAP33076 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
CIITAP33076 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CIITAP33076 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CIITAP33076 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC16.72■□□□□ 0.27
CIITAP33076 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CIITAP33076 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CIITAP33076 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CIITAP33076 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CIITAP33076 RPL14-202ENST00000396203 916 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CIITAP33076 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC16.72■□□□□ 0.27
CIITAP33076 AC006033.1-201ENST00000440505 426 ntBASIC16.72■□□□□ 0.27
CIITAP33076 KLF2P1-201ENST00000447438 1042 ntBASIC16.72■□□□□ 0.27
CIITAP33076 AC104306.2-201ENST00000451877 341 ntBASIC16.72■□□□□ 0.27
CIITAP33076 TUBB8P8-201ENST00000458717 1058 ntBASIC16.72■□□□□ 0.27
CIITAP33076 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CIITAP33076 AC010973.2-201ENST00000485974 1230 ntTSL 2 BASIC16.72■□□□□ 0.27
CIITAP33076 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC16.72■□□□□ 0.27
CIITAP33076 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC16.72■□□□□ 0.27
CIITAP33076 AP002748.3-203ENST00000533502 581 ntTSL 3 BASIC16.72■□□□□ 0.27
CIITAP33076 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CIITAP33076 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC16.72■□□□□ 0.27
CIITAP33076 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CIITAP33076 DIO1-215ENST00000610607 796 ntTSL 5 BASIC16.72■□□□□ 0.27
CIITAP33076 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC16.72■□□□□ 0.27
CIITAP33076 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC16.72■□□□□ 0.27
CIITAP33076 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
CIITAP33076 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CIITAP33076 KRT8P29-201ENST00000420409 1371 ntBASIC16.72■□□□□ 0.27
CIITAP33076 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
CIITAP33076 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CIITAP33076 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC16.72■□□□□ 0.27
CIITAP33076 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CIITAP33076 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
CIITAP33076 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC16.72■□□□□ 0.27
CIITAP33076 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
CIITAP33076 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
CIITAP33076 UROD-201ENST00000246337 1300 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CIITAP33076 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CIITAP33076 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CIITAP33076 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
CIITAP33076 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CIITAP33076 MBTD1-201ENST00000376381 1420 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CIITAP33076 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
CIITAP33076 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC16.71■□□□□ 0.27
CIITAP33076 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CIITAP33076 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 68.3 ms