Protein–RNA interactions for Protein: P31275

HOXC12, Homeobox protein Hox-C12, humanhuman

Predictions only

Length 282 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC12P31275 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
HOXC12P31275 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC13.34□□□□□ -0.27
HOXC12P31275 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
HOXC12P31275 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC13.34□□□□□ -0.27
HOXC12P31275 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC13.34□□□□□ -0.27
HOXC12P31275 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC13.34□□□□□ -0.27
HOXC12P31275 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
HOXC12P31275 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC13.34□□□□□ -0.27
HOXC12P31275 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
HOXC12P31275 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC13.34□□□□□ -0.27
HOXC12P31275 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC13.34□□□□□ -0.27
HOXC12P31275 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC13.34□□□□□ -0.27
HOXC12P31275 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
HOXC12P31275 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
HOXC12P31275 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
HOXC12P31275 TNS2-219ENST00000552570 4714 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
HOXC12P31275 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
HOXC12P31275 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
HOXC12P31275 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC13.34□□□□□ -0.27
HOXC12P31275 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
HOXC12P31275 SLC29A1-201ENST00000371708 2159 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
HOXC12P31275 ST20-AS1-201ENST00000560255 4223 ntBASIC13.34□□□□□ -0.27
HOXC12P31275 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC13.34□□□□□ -0.27
HOXC12P31275 FUBP1-203ENST00000370768 2378 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
HOXC12P31275 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.27
HOXC12P31275 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
HOXC12P31275 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.27
HOXC12P31275 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
HOXC12P31275 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
HOXC12P31275 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC13.33□□□□□ -0.27
HOXC12P31275 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
HOXC12P31275 SAMD4A-202ENST00000392067 6833 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.28
HOXC12P31275 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
HOXC12P31275 CHRFAM7A-201ENST00000299847 6220 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
HOXC12P31275 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
HOXC12P31275 STAB1-201ENST00000321725 7928 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
HOXC12P31275 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC13.33□□□□□ -0.28
HOXC12P31275 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
HOXC12P31275 YIPF6-204ENST00000462683 6741 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
HOXC12P31275 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
HOXC12P31275 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
HOXC12P31275 TPM3P8-201ENST00000330554 643 ntBASIC13.33□□□□□ -0.28
HOXC12P31275 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
HOXC12P31275 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
HOXC12P31275 TPO-206ENST00000382269 1155 ntTSL 5 BASIC13.33□□□□□ -0.28
HOXC12P31275 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC13.33□□□□□ -0.28
HOXC12P31275 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC13.33□□□□□ -0.28
HOXC12P31275 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC13.33□□□□□ -0.28
HOXC12P31275 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC13.33□□□□□ -0.28
HOXC12P31275 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC13.33□□□□□ -0.28
HOXC12P31275 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC13.33□□□□□ -0.28
HOXC12P31275 PLA2G4C-AS1-201ENST00000596552 568 ntTSL 3 BASIC13.33□□□□□ -0.28
HOXC12P31275 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.28
HOXC12P31275 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC13.33□□□□□ -0.28
HOXC12P31275 AC145423.3-201ENST00000615987 467 ntBASIC13.33□□□□□ -0.28
HOXC12P31275 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC13.33□□□□□ -0.28
HOXC12P31275 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.28
HOXC12P31275 ALDH7A1-201ENST00000409134 4964 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.28
HOXC12P31275 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
HOXC12P31275 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
HOXC12P31275 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
HOXC12P31275 TMEM30B-202ENST00000555868 4471 ntAPPRIS P1 BASIC13.33□□□□□ -0.28
HOXC12P31275 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC13.33□□□□□ -0.28
HOXC12P31275 AAK1-202ENST00000409068 2606 ntTSL 2 BASIC13.33□□□□□ -0.28
HOXC12P31275 DENND3-202ENST00000424248 4740 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
HOXC12P31275 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
HOXC12P31275 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
HOXC12P31275 TRAF3-208ENST00000560371 7640 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
HOXC12P31275 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
HOXC12P31275 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC13.33□□□□□ -0.28
HOXC12P31275 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
HOXC12P31275 REXO1L4P-201ENST00000605109 1937 ntBASIC13.33□□□□□ -0.28
HOXC12P31275 GSN-206ENST00000394353 2311 ntTSL 2 BASIC13.33□□□□□ -0.28
HOXC12P31275 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
HOXC12P31275 ZBED1-203ENST00000381223 4510 ntAPPRIS P1 TSL 2 BASIC13.32□□□□□ -0.28
HOXC12P31275 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HOXC12P31275 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HOXC12P31275 PER3-208ENST00000613533 6318 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
HOXC12P31275 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HOXC12P31275 NCOR2-201ENST00000356219 7226 ntTSL 5 BASIC13.32□□□□□ -0.28
HOXC12P31275 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
HOXC12P31275 LINC00384-201ENST00000437721 6852 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
HOXC12P31275 ABR-203ENST00000536794 2213 ntTSL 2 BASIC13.32□□□□□ -0.28
HOXC12P31275 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC13.32□□□□□ -0.28
HOXC12P31275 SGTB-201ENST00000381007 5469 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HOXC12P31275 CMTR2-201ENST00000338099 4869 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HOXC12P31275 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC13.32□□□□□ -0.28
HOXC12P31275 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HOXC12P31275 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC13.32□□□□□ -0.28
HOXC12P31275 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
HOXC12P31275 ZNF395-201ENST00000344423 4808 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HOXC12P31275 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HOXC12P31275 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HOXC12P31275 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HOXC12P31275 TEX13B-201ENST00000302917 1248 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HOXC12P31275 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HOXC12P31275 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HOXC12P31275 B9D1-203ENST00000395615 805 ntTSL 3 BASIC13.32□□□□□ -0.28
HOXC12P31275 AC104457.1-201ENST00000401024 814 ntBASIC13.32□□□□□ -0.28
HOXC12P31275 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 50 ms