Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
VCANP13611 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
VCANP13611 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
VCANP13611 AL080243.1-201ENST00000423293 1060 ntBASIC15.02□□□□□ -0.01
VCANP13611 ERP29P1-201ENST00000442902 706 ntBASIC15.02□□□□□ -0.01
VCANP13611 AC008494.1-201ENST00000497612 796 ntBASIC15.02□□□□□ -0.01
VCANP13611 C11orf45-202ENST00000524878 609 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
VCANP13611 AL135936.1-201ENST00000617956 998 ntTSL 5 BASIC15.02□□□□□ -0.01
VCANP13611 AC073578.2-201ENST00000618927 464 ntTSL 4 BASIC15.02□□□□□ -0.01
VCANP13611 LINC01012-203ENST00000628762 743 ntTSL 5 BASIC15.02□□□□□ -0.01
VCANP13611 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC15.02□□□□□ -0.01
VCANP13611 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
VCANP13611 TMEM9-203ENST00000367333 1564 ntAPPRIS P3 TSL 1 (best) BASIC15.02□□□□□ -0.01
VCANP13611 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
VCANP13611 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
VCANP13611 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
VCANP13611 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
VCANP13611 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
VCANP13611 CNMD-203ENST00000448904 1444 ntAPPRIS ALT1 TSL 1 (best) BASIC15.01□□□□□ -0.01
VCANP13611 SMOC2-201ENST00000354536 3150 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
VCANP13611 BCKDHA-202ENST00000457836 1745 ntTSL 2 BASIC15.01□□□□□ -0.01
VCANP13611 AKIP1-203ENST00000309377 1327 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
VCANP13611 NCR1-204ENST00000357397 594 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
VCANP13611 RN7SL33P-201ENST00000462543 342 ntBASIC15.01□□□□□ -0.01
VCANP13611 RN7SL523P-201ENST00000484401 298 ntBASIC15.01□□□□□ -0.01
VCANP13611 AC004889.1-201ENST00000498693 856 ntTSL 5 BASIC15.01□□□□□ -0.01
VCANP13611 AC004066.1-201ENST00000502488 802 ntBASIC15.01□□□□□ -0.01
VCANP13611 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC15.01□□□□□ -0.01
VCANP13611 AC023421.2-201ENST00000589510 313 ntTSL 5 BASIC15.01□□□□□ -0.01
VCANP13611 AL499606.1-201ENST00000627866 413 ntTSL 3 BASIC15.01□□□□□ -0.01
VCANP13611 Z82244.2-201ENST00000632196 448 ntBASIC15.01□□□□□ -0.01
VCANP13611 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
VCANP13611 VDAC2-202ENST00000313132 1467 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
VCANP13611 RBP1-205ENST00000492918 1487 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
VCANP13611 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC15.01□□□□□ -0.01
VCANP13611 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
VCANP13611 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC15.01□□□□□ -0.01
VCANP13611 ID2-AS1-201ENST00000412712 953 ntTSL 5 BASIC15.01□□□□□ -0.01
VCANP13611 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
VCANP13611 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
VCANP13611 KCNN3-202ENST00000358505 1658 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
VCANP13611 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
VCANP13611 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC15.01□□□□□ -0.01
VCANP13611 LSS-201ENST00000356396 2995 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
VCANP13611 MIR645-201ENST00000385283 94 ntBASIC15.01□□□□□ -0.01
VCANP13611 MKRN3-202ENST00000564592 629 ntTSL 3 BASIC15.01□□□□□ -0.01
VCANP13611 AC023090.2-201ENST00000625182 2110 ntBASIC15.01□□□□□ -0.01
VCANP13611 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC15.01□□□□□ -0.01
VCANP13611 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
VCANP13611 AC138761.6-201ENST00000583997 1423 ntBASIC15□□□□□ -0.01
VCANP13611 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC15□□□□□ -0.01
VCANP13611 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC15□□□□□ -0.01
VCANP13611 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
VCANP13611 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC15□□□□□ -0.01
VCANP13611 BTNL8-203ENST00000400707 1512 ntTSL 2 BASIC15□□□□□ -0.01
VCANP13611 KRTAP2-3-201ENST00000391418 875 ntAPPRIS P1 BASIC15□□□□□ -0.01
VCANP13611 FRGCA-201ENST00000424933 422 ntTSL 3 BASIC15□□□□□ -0.01
VCANP13611 LINC00303-203ENST00000427799 1028 ntTSL 1 (best) BASIC15□□□□□ -0.01
VCANP13611 KCNC4-AS1-201ENST00000455967 748 ntTSL 2 BASIC15□□□□□ -0.01
VCANP13611 AC104964.1-201ENST00000520494 489 ntTSL 2 BASIC15□□□□□ -0.01
VCANP13611 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC15□□□□□ -0.01
VCANP13611 AC145422.1-201ENST00000541574 544 ntTSL 3 BASIC15□□□□□ -0.01
VCANP13611 MIR4459-201ENST00000581837 66 ntBASIC15□□□□□ -0.01
VCANP13611 AC016582.2-202ENST00000587765 1094 ntBASIC15□□□□□ -0.01
VCANP13611 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC15□□□□□ -0.01
VCANP13611 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
VCANP13611 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
VCANP13611 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
VCANP13611 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC15□□□□□ -0.01
VCANP13611 SMIM4-201ENST00000307106 274 ntTSL 2 BASIC15□□□□□ -0.01
VCANP13611 KRT18P4-201ENST00000422599 1288 ntBASIC15□□□□□ -0.01
VCANP13611 IQCF4-202ENST00000422896 745 ntTSL 2 BASIC15□□□□□ -0.01
VCANP13611 AC004771.1-201ENST00000438266 583 ntTSL 2 BASIC15□□□□□ -0.01
VCANP13611 SMIM15-202ENST00000507416 584 ntAPPRIS P1 TSL 2 BASIC15□□□□□ -0.01
VCANP13611 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC15□□□□□ -0.01
VCANP13611 ATP6V1D-206ENST00000554236 888 ntTSL 5 BASIC15□□□□□ -0.01
VCANP13611 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC15□□□□□ -0.01
VCANP13611 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC15□□□□□ -0.01
VCANP13611 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC15□□□□□ -0.01
VCANP13611 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
VCANP13611 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
VCANP13611 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
VCANP13611 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC15□□□□□ -0.01
VCANP13611 RER1-203ENST00000378513 3000 ntTSL 3 BASIC14.99□□□□□ -0.01
VCANP13611 LGALS12-202ENST00000340246 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
VCANP13611 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
VCANP13611 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
VCANP13611 PDCD6-201ENST00000264933 1135 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
VCANP13611 CDKN2A-AS1-201ENST00000441769 823 ntBASIC14.99□□□□□ -0.01
VCANP13611 CMPK1-204ENST00000450808 950 ntTSL 2 BASIC14.99□□□□□ -0.01
VCANP13611 RN7SL128P-201ENST00000467883 305 ntBASIC14.99□□□□□ -0.01
VCANP13611 TBX5-AS1-202ENST00000531024 766 ntTSL 3 BASIC14.99□□□□□ -0.01
VCANP13611 GABARAPL1-213ENST00000544284 531 ntTSL 3 BASIC14.99□□□□□ -0.01
VCANP13611 BLOC1S1-202ENST00000548556 525 ntTSL 2 BASIC14.99□□□□□ -0.01
VCANP13611 AC010183.1-201ENST00000552413 559 ntTSL 4 BASIC14.99□□□□□ -0.01
VCANP13611 IFITM2-205ENST00000602569 605 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
VCANP13611 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
VCANP13611 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC14.99□□□□□ -0.01
VCANP13611 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
VCANP13611 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 52.7 ms