Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
COL6A3P12111 FAM9B-201ENST00000327220 1340 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
COL6A3P12111 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
COL6A3P12111 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC14.98□□□□□ -0.01
COL6A3P12111 AC080080.1-201ENST00000625121 2420 ntBASIC14.98□□□□□ -0.01
COL6A3P12111 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
COL6A3P12111 TFG-208ENST00000490574 1696 ntAPPRIS P3 TSL 3 BASIC14.98□□□□□ -0.01
COL6A3P12111 MYC-206ENST00000613283 1365 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
COL6A3P12111 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC14.98□□□□□ -0.01
COL6A3P12111 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
COL6A3P12111 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC14.98□□□□□ -0.01
COL6A3P12111 FAM163B-201ENST00000356873 1131 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
COL6A3P12111 DUX4L31-201ENST00000446466 1136 ntBASIC14.98□□□□□ -0.01
COL6A3P12111 C10orf90-207ENST00000480379 1012 ntAPPRIS ALT2 TSL 2 BASIC14.98□□□□□ -0.01
COL6A3P12111 AC246817.2-204ENST00000517984 562 ntTSL 4 BASIC14.98□□□□□ -0.01
COL6A3P12111 RPL10P8-201ENST00000522888 313 ntBASIC14.98□□□□□ -0.01
COL6A3P12111 AP003043.1-201ENST00000527804 547 ntTSL 4 BASIC14.98□□□□□ -0.01
COL6A3P12111 TNFSF13B-206ENST00000542136 495 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
COL6A3P12111 INCA1-204ENST00000576820 973 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
COL6A3P12111 ATP5A1-215ENST00000590665 1793 ntTSL 2 BASIC14.98□□□□□ -0.01
COL6A3P12111 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
COL6A3P12111 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
COL6A3P12111 HTR3E-203ENST00000425359 1326 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
COL6A3P12111 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC14.98□□□□□ -0.01
COL6A3P12111 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC14.98□□□□□ -0.01
COL6A3P12111 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
COL6A3P12111 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
COL6A3P12111 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
COL6A3P12111 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
COL6A3P12111 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
COL6A3P12111 ILF3-AS1-201ENST00000591501 1983 ntBASIC14.98□□□□□ -0.01
COL6A3P12111 MRM2-201ENST00000242257 1601 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
COL6A3P12111 TRIQK-219ENST00000523580 1630 ntTSL 2 BASIC14.98□□□□□ -0.01
COL6A3P12111 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC14.98□□□□□ -0.01
COL6A3P12111 JTB-202ENST00000356648 1040 ntTSL 2 BASIC14.98□□□□□ -0.01
COL6A3P12111 IGF2-201ENST00000381389 1023 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
COL6A3P12111 MRPL23-203ENST00000397294 551 ntTSL 4 BASIC14.98□□□□□ -0.01
COL6A3P12111 TRBC2-201ENST00000466254 758 ntAPPRIS P1 BASIC14.98□□□□□ -0.01
COL6A3P12111 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC14.98□□□□□ -0.01
COL6A3P12111 SRP9-201ENST00000304786 1480 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
COL6A3P12111 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC14.98□□□□□ -0.01
COL6A3P12111 C7orf49-214ENST00000620897 1349 ntTSL 3 BASIC14.98□□□□□ -0.01
COL6A3P12111 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC14.98□□□□□ -0.01
COL6A3P12111 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
COL6A3P12111 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC14.98□□□□□ -0.01
COL6A3P12111 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
COL6A3P12111 AC022211.2-201ENST00000585075 2527 ntBASIC14.98□□□□□ -0.01
COL6A3P12111 PGAM2-201ENST00000297283 857 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
COL6A3P12111 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
COL6A3P12111 CFL1P1-204ENST00000456375 424 ntTSL 3 BASIC14.97□□□□□ -0.01
COL6A3P12111 AC005323.2-202ENST00000581304 493 ntTSL 3 BASIC14.97□□□□□ -0.01
COL6A3P12111 Metazoa_SRP.83-201ENST00000611762 320 ntBASIC14.97□□□□□ -0.01
COL6A3P12111 Metazoa_SRP.37-201ENST00000617743 320 ntBASIC14.97□□□□□ -0.01
COL6A3P12111 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
COL6A3P12111 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
COL6A3P12111 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC14.97□□□□□ -0.01
COL6A3P12111 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
COL6A3P12111 SUPT20HL2-201ENST00000486479 2409 ntBASIC14.97□□□□□ -0.01
COL6A3P12111 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
COL6A3P12111 AL591499.1-201ENST00000307155 1153 ntBASIC14.97□□□□□ -0.01
COL6A3P12111 IGFL4-201ENST00000377697 573 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
COL6A3P12111 HNRNPA1P27-201ENST00000412087 955 ntBASIC14.97□□□□□ -0.01
COL6A3P12111 AL121787.1-202ENST00000445838 876 ntTSL 5 BASIC14.97□□□□□ -0.01
COL6A3P12111 TCEAL4-206ENST00000468024 1135 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
COL6A3P12111 AC108112.1-201ENST00000505567 659 ntTSL 5 BASIC14.97□□□□□ -0.01
COL6A3P12111 EEF1GP8-201ENST00000506566 1154 ntBASIC14.97□□□□□ -0.01
COL6A3P12111 HNRNPA1P7-201ENST00000521273 963 ntBASIC14.97□□□□□ -0.01
COL6A3P12111 RPL30-213ENST00000523172 274 ntTSL 5 BASIC14.97□□□□□ -0.01
COL6A3P12111 CACNA1C-AS1-203ENST00000544517 742 ntTSL 4 BASIC14.97□□□□□ -0.01
COL6A3P12111 AC010319.4-201ENST00000593957 691 ntTSL 3 BASIC14.97□□□□□ -0.01
COL6A3P12111 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
COL6A3P12111 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
COL6A3P12111 OSCP1-201ENST00000235532 1455 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
COL6A3P12111 OSCP1-203ENST00000356637 1463 ntTSL 5 BASIC14.97□□□□□ -0.01
COL6A3P12111 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
COL6A3P12111 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
COL6A3P12111 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC14.97□□□□□ -0.01
COL6A3P12111 LINC02449-201ENST00000304751 795 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
COL6A3P12111 POP5-201ENST00000341039 913 ntTSL 2 BASIC14.97□□□□□ -0.01
COL6A3P12111 MFAP3-202ENST00000439768 1186 ntTSL 2 BASIC14.97□□□□□ -0.01
COL6A3P12111 C12orf57-204ENST00000540506 551 ntTSL 2 BASIC14.97□□□□□ -0.01
COL6A3P12111 BCAR1P1-201ENST00000553953 636 ntBASIC14.97□□□□□ -0.01
COL6A3P12111 RN7SL605P-201ENST00000577229 281 ntBASIC14.97□□□□□ -0.01
COL6A3P12111 PDLIM1P1-201ENST00000604187 969 ntBASIC14.97□□□□□ -0.01
COL6A3P12111 MIR6749-201ENST00000617008 69 ntBASIC14.97□□□□□ -0.01
COL6A3P12111 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
COL6A3P12111 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
COL6A3P12111 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC14.97□□□□□ -0.01
COL6A3P12111 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
COL6A3P12111 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
COL6A3P12111 HTR3E-205ENST00000436361 1371 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
COL6A3P12111 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC14.97□□□□□ -0.01
COL6A3P12111 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
COL6A3P12111 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
COL6A3P12111 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC14.96□□□□□ -0.01
COL6A3P12111 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC14.96□□□□□ -0.01
COL6A3P12111 ZSCAN21-203ENST00000456748 1904 ntTSL 5 BASIC14.96□□□□□ -0.01
COL6A3P12111 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
COL6A3P12111 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC14.96□□□□□ -0.01
COL6A3P12111 SFSWAP-210ENST00000541286 3219 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 70.7 ms