Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC17.5■□□□□ 0.39
HLA-DOAP06340 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC17.49■□□□□ 0.39
HLA-DOAP06340 MRPL37P1-201ENST00000592451 1337 ntBASIC17.49■□□□□ 0.39
HLA-DOAP06340 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC17.49■□□□□ 0.39
HLA-DOAP06340 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC17.49■□□□□ 0.39
HLA-DOAP06340 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HLA-DOAP06340 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
HLA-DOAP06340 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC17.49■□□□□ 0.39
HLA-DOAP06340 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC17.49■□□□□ 0.39
HLA-DOAP06340 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC17.49■□□□□ 0.39
HLA-DOAP06340 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HLA-DOAP06340 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HLA-DOAP06340 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
HLA-DOAP06340 RAB36-202ENST00000341989 936 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
HLA-DOAP06340 CSNK2B-201ENST00000375865 908 ntAPPRIS P1 TSL 3 BASIC17.49■□□□□ 0.39
HLA-DOAP06340 AC079807.2-203ENST00000417692 656 ntTSL 2 BASIC17.49■□□□□ 0.39
HLA-DOAP06340 PTPA-215ENST00000432124 567 ntTSL 4 BASIC17.49■□□□□ 0.39
HLA-DOAP06340 LINC01006-204ENST00000435354 545 ntTSL 2 BASIC17.49■□□□□ 0.39
HLA-DOAP06340 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
HLA-DOAP06340 AC012618.1-201ENST00000461223 412 ntBASIC17.49■□□□□ 0.39
HLA-DOAP06340 IMP3P2-201ENST00000489760 475 ntBASIC17.49■□□□□ 0.39
HLA-DOAP06340 PMP22-206ENST00000494511 872 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
HLA-DOAP06340 SUPT4H1P2-201ENST00000501248 353 ntBASIC17.49■□□□□ 0.39
HLA-DOAP06340 NUP210P1-202ENST00000504322 710 ntBASIC17.49■□□□□ 0.39
HLA-DOAP06340 AC074194.1-201ENST00000505025 622 ntTSL 4 BASIC17.49■□□□□ 0.39
HLA-DOAP06340 AC015689.1-201ENST00000525365 462 ntTSL 2 BASIC17.49■□□□□ 0.39
HLA-DOAP06340 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
HLA-DOAP06340 AC015967.2-201ENST00000624092 234 ntBASIC17.49■□□□□ 0.39
HLA-DOAP06340 AC006435.4-201ENST00000625037 234 ntBASIC17.49■□□□□ 0.39
HLA-DOAP06340 AL356737.1-201ENST00000634391 234 ntBASIC17.49■□□□□ 0.39
HLA-DOAP06340 MVK-217ENST00000639206 367 ntTSL 5 BASIC17.49■□□□□ 0.39
HLA-DOAP06340 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HLA-DOAP06340 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HLA-DOAP06340 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
HLA-DOAP06340 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
HLA-DOAP06340 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HLA-DOAP06340 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
HLA-DOAP06340 AC022532.1-201ENST00000624563 1728 ntBASIC17.49■□□□□ 0.39
HLA-DOAP06340 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HLA-DOAP06340 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HLA-DOAP06340 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
HLA-DOAP06340 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HLA-DOAP06340 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
HLA-DOAP06340 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
HLA-DOAP06340 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC17.48■□□□□ 0.39
HLA-DOAP06340 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HLA-DOAP06340 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
HLA-DOAP06340 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
HLA-DOAP06340 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC17.48■□□□□ 0.39
HLA-DOAP06340 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
HLA-DOAP06340 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HLA-DOAP06340 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC17.48■□□□□ 0.39
HLA-DOAP06340 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
HLA-DOAP06340 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC17.48■□□□□ 0.39
HLA-DOAP06340 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HLA-DOAP06340 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HLA-DOAP06340 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
HLA-DOAP06340 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HLA-DOAP06340 FAM45A-201ENST00000361432 1648 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HLA-DOAP06340 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
HLA-DOAP06340 OR1J1-201ENST00000259357 969 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
HLA-DOAP06340 AC092506.1-202ENST00000401022 528 ntBASIC17.48■□□□□ 0.39
HLA-DOAP06340 AL645933.1-201ENST00000440087 609 ntBASIC17.48■□□□□ 0.39
HLA-DOAP06340 AC006335.1-201ENST00000445200 547 ntBASIC17.48■□□□□ 0.39
HLA-DOAP06340 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC17.48■□□□□ 0.39
HLA-DOAP06340 ZNF419-208ENST00000518999 746 ntTSL 3 BASIC17.48■□□□□ 0.39
HLA-DOAP06340 MRPL48-210ENST00000542303 661 ntTSL 3 BASIC17.48■□□□□ 0.39
HLA-DOAP06340 AC025259.3-202ENST00000564363 687 ntTSL 2 BASIC17.48■□□□□ 0.39
HLA-DOAP06340 FGFR3P5-201ENST00000564496 886 ntBASIC17.48■□□□□ 0.39
HLA-DOAP06340 AL645941.3-201ENST00000580587 577 ntTSL 4 BASIC17.48■□□□□ 0.39
HLA-DOAP06340 AC127024.2-201ENST00000581019 789 ntTSL 5 BASIC17.48■□□□□ 0.39
HLA-DOAP06340 ARL16-215ENST00000622299 1053 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HLA-DOAP06340 LINC01669-205ENST00000624561 713 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
HLA-DOAP06340 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC17.48■□□□□ 0.39
HLA-DOAP06340 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HLA-DOAP06340 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HLA-DOAP06340 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC17.48■□□□□ 0.39
HLA-DOAP06340 AC092135.3-201ENST00000624151 1846 ntBASIC17.48■□□□□ 0.39
HLA-DOAP06340 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
HLA-DOAP06340 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HLA-DOAP06340 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC17.48■□□□□ 0.39
HLA-DOAP06340 FXYD5-201ENST00000342879 1580 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
HLA-DOAP06340 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
HLA-DOAP06340 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HLA-DOAP06340 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC17.48■□□□□ 0.39
HLA-DOAP06340 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
HLA-DOAP06340 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
HLA-DOAP06340 AC136759.1-202ENST00000530858 2194 ntBASIC17.47■□□□□ 0.39
HLA-DOAP06340 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC17.47■□□□□ 0.39
HLA-DOAP06340 AC013726.1-201ENST00000563747 2285 ntBASIC17.47■□□□□ 0.39
HLA-DOAP06340 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HLA-DOAP06340 PARN-202ENST00000420015 2360 ntTSL 2 BASIC17.47■□□□□ 0.39
HLA-DOAP06340 SGCE-204ENST00000428696 1409 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
HLA-DOAP06340 MYL6-219ENST00000551589 1438 ntAPPRIS ALT1 TSL 2 BASIC17.47■□□□□ 0.39
HLA-DOAP06340 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC17.47■□□□□ 0.39
HLA-DOAP06340 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
HLA-DOAP06340 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
HLA-DOAP06340 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC17.47■□□□□ 0.39
HLA-DOAP06340 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
HLA-DOAP06340 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC17.47■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 672.8 ms